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2008 1
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Page 1
SPINE bioinformatics and data-management aspects of high-throughput structural biology.
Albeck S, Alzari P, Andreini C, Banci L, Berry IM, Bertini I, Cambillau C, Canard B, Carter L, Cohen SX, Diprose JM, Dym O, Esnouf RM, Felder C, Ferron F, Guillemot F, Hamer R, Ben Jelloul M, Laskowski RA, Laurent T, Longhi S, Lopez R, Luchinat C, Malet H, Mochel T, Morris RJ, Moulinier L, Oinn T, Pajon A, Peleg Y, Perrakis A, Poch O, Prilusky J, Rachedi A, Ripp R, Rosato A, Silman I, Stuart DI, Sussman JL, Thierry JC, Thompson JD, Thornton JM, Unger T, Vaughan B, Vranken W, Watson JD, Whamond G, Henrick K. Albeck S, et al. Acta Crystallogr D Biol Crystallogr. 2006 Oct;62(Pt 10):1184-95. doi: 10.1107/S090744490602991X. Epub 2006 Sep 19. Acta Crystallogr D Biol Crystallogr. 2006. PMID: 17001095 Free PMC article. Review.
Data management in structural genomics: an overview.
Haquin S, Oeuillet E, Pajon A, Harris M, Jones AT, van Tilbeurgh H, Markley JL, Zolnai Z, Poupon A. Haquin S, et al. Methods Mol Biol. 2008;426:49-79. doi: 10.1007/978-1-60327-058-8_4. Methods Mol Biol. 2008. PMID: 18542857 Review.
PDBe: Protein Data Bank in Europe.
Velankar S, Alhroub Y, Alili A, Best C, Boutselakis HC, Caboche S, Conroy MJ, Dana JM, van Ginkel G, Golovin A, Gore SP, Gutmanas A, Haslam P, Hirshberg M, John M, Lagerstedt I, Mir S, Newman LE, Oldfield TJ, Penkett CJ, Pineda-Castillo J, Rinaldi L, Sahni G, Sawka G, Sen S, Slowley R, Sousa da Silva AW, Suarez-Uruena A, Swaminathan GJ, Symmons MF, Vranken WF, Wainwright M, Kleywegt GJ. Velankar S, et al. Nucleic Acids Res. 2011 Jan;39(Database issue):D402-10. doi: 10.1093/nar/gkq985. Epub 2010 Nov 2. Nucleic Acids Res. 2011. PMID: 21045060 Free PMC article.
Design of a data model for developing laboratory information management and analysis systems for protein production.
Pajon A, Ionides J, Diprose J, Fillon J, Fogh R, Ashton AW, Berman H, Boucher W, Cygler M, Deleury E, Esnouf R, Janin J, Kim R, Krimm I, Lawson CL, Oeuillet E, Poupon A, Raymond S, Stevens T, van Tilbeurgh H, Westbrook J, Wood P, Ulrich E, Vranken W, Xueli L, Laue E, Stuart DI, Henrick K. Pajon A, et al. Proteins. 2005 Feb 1;58(2):278-84. doi: 10.1002/prot.20303. Proteins. 2005. PMID: 15562521
HalX: an open-source LIMS (Laboratory Information Management System) for small- to large-scale laboratories.
Prilusky J, Oueillet E, Ulryck N, Pajon A, Bernauer J, Krimm I, Quevillon-Cheruel S, Leulliot N, Graille M, Liger D, Trésaugues L, Sussman JL, Janin J, van Tilbeurgh H, Poupon A. Prilusky J, et al. Acta Crystallogr D Biol Crystallogr. 2005 Jun;61(Pt 6):671-8. doi: 10.1107/S0907444905001290. Epub 2005 May 26. Acta Crystallogr D Biol Crystallogr. 2005. PMID: 15930618