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Year Number of Results
2019 1
2020 19
2021 36
2022 21
2023 13
2024 3

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90 results

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Page 1
Rapid viral metagenomics using SMART-9N amplification and nanopore sequencing.
Claro IM, Ramundo MS, Coletti TM, da Silva CAM, Valenca IN, Candido DS, Sales FCS, Manuli ER, de Jesus JG, de Paula A, Felix AC, Andrade PDS, Pinho MC, Souza WM, Amorim MR, Proenca-Modena JL, Kallas EG, Levi JE, Faria NR, Sabino EC, Loman NJ, Quick J. Claro IM, et al. Wellcome Open Res. 2023 Apr 24;6:241. doi: 10.12688/wellcomeopenres.17170.2. eCollection 2021. Wellcome Open Res. 2023. PMID: 37224315 Free PMC article.
Global disparities in SARS-CoV-2 genomic surveillance.
Brito AF, Semenova E, Dudas G, Hassler GW, Kalinich CC, Kraemer MUG, Ho J, Tegally H, Githinji G, Agoti CN, Matkin LE, Whittaker C; Bulgarian SARS-CoV-2 sequencing group; Communicable Diseases Genomics Network (Australia and New Zealand); COVID-19 Impact Project; Danish Covid-19 Genome Consortium; Fiocruz COVID-19 Genomic Surveillance Network; GISAID core curation team; Network for Genomic Surveillance in South Africa (NGS-SA); Swiss SARS-CoV-2 Sequencing Consortium; Howden BP, Sintchenko V, Zuckerman NS, Mor O, Blankenship HM, de Oliveira T, Lin RTP, Siqueira MM, Resende PC, Vasconcelos ATR, Spilki FR, Aguiar RS, Alexiev I, Ivanov IN, Philipova I, Carrington CVF, Sahadeo NSD, Branda B, Gurry C, Maurer-Stroh S, Naidoo D, von Eije KJ, Perkins MD, van Kerkhove M, Hill SC, Sabino EC, Pybus OG, Dye C, Bhatt S, Flaxman S, Suchard MA, Grubaugh ND, Baele G, Faria NR. Brito AF, et al. Nat Commun. 2022 Nov 16;13(1):7003. doi: 10.1038/s41467-022-33713-y. Nat Commun. 2022. PMID: 36385137 Free PMC article.
Understanding Sabiá virus infections (Brazilian mammarenavirus).
Nastri AC, Duarte-Neto AN, Casadio LVB, Souza WM, Claro IM, Manuli ER, Selegatto G, Salomão MC, Fialkovitz G, Taborda M, Almeida BL, Magri MC, Guedes AR, Perdigão Neto LV, Sataki FM, Guimarães T, Mendes-Correa MC, Tozetto-Mendoza TR, Fumagalli MJ, Ho YL, Maia da Silva CA, Coletti TM, Goes de Jesus J, Romano CM, Hill SC, Pybus O, Rebello Pinho JR, Ledesma FL, Casal YR, Kanamura CT, Tadeu de Araújo LJ, Ferreira CSDS, Guerra JM, Figueiredo LTM, Dolhnikoff M, Faria NR, Sabino EC, Alves VAF, Levin AS. Nastri AC, et al. Travel Med Infect Dis. 2022 Jul-Aug;48:102351. doi: 10.1016/j.tmaid.2022.102351. Epub 2022 May 7. Travel Med Infect Dis. 2022. PMID: 35537676
Spatiotemporal dynamics and recurrence of chikungunya virus in Brazil: an epidemiological study.
de Souza WM, de Lima STS, Simões Mello LM, Candido DS, Buss L, Whittaker C, Claro IM, Chandradeva N, Granja F, de Jesus R, Lemos PS, Toledo-Teixeira DA, Barbosa PP, Firmino ACL, Amorim MR, Duarte LMF, Pessoa IB Jr, Forato J, Vasconcelos IL, Maximo ACBM, Araújo ELL, Perdigão Mello L, Sabino EC, Proença-Módena JL, Faria NR, Weaver SC. de Souza WM, et al. Lancet Microbe. 2023 May;4(5):e319-e329. doi: 10.1016/S2666-5247(23)00033-2. Epub 2023 Apr 6. Lancet Microbe. 2023. PMID: 37031687 Free PMC article.
Epidemic Spread of SARS-CoV-2 Lineage B.1.1.7 in Brazil.
Moreira FRR, Bonfim DM, Zauli DAG, Silva JP, Lima AB, Malta FSV, Ferreira ACS, Pardini VC, Magalhães WCS, Queiroz DC, Souza RM, Geddes VEV, Costa WC, Moreira RG, Faria NR, Voloch CM, Souza RP, Aguiar RS. Moreira FRR, et al. Viruses. 2021 May 26;13(6):984. doi: 10.3390/v13060984. Viruses. 2021. PMID: 34073177 Free PMC article.
Clusters of SARS-CoV-2 Lineage B.1.1.7 Infection after Vaccination with Adenovirus-Vectored and Inactivated Vaccines.
de Souza WM, Muraro SP, Souza GF, Amorim MR, Sesti-Costa R, Mofatto LS, Forato J, Barbosa PP, Toledo-Teixeira DA, Bispo-Dos-Santos K, Parise PL, Brunetti NS, Moreira JCO, Costa VA, Cardozo DM, Moretti ML, Barros-Mazon S, Marchesi GF, Ambrosio C, Spilki FR, Almeida VC, Vieira AS, Zambon L, Farias AS, Addas-Carvalho M, Benites BD, Marques RE, Sabino EC, Zuben ABV, Weaver SC, Faria NR, Granja F, Angerami RN, Proença-Módena JL. de Souza WM, et al. Viruses. 2021 Oct 22;13(11):2127. doi: 10.3390/v13112127. Viruses. 2021. PMID: 34834934 Free PMC article.
Global disparities in SARS-CoV-2 genomic surveillance.
Brito AF, Semenova E, Dudas G, Hassler GW, Kalinich CC, Kraemer MUG, Ho J, Tegally H, Githinji G, Agoti CN, Matkin LE, Whittaker C; Danish Covid-19 Genome Consortium; COVID-19 Impact Project; Network for Genomic Surveillance in South Africa (NGS-SA); GISAID core curation team; Howden BP, Sintchenko V, Zuckerman NS, Mor O, Blankenship HM, de Oliveira T, Lin RTP, Siqueira MM, Resende PC, Vasconcelos ATR, Spilki FR, Aguiar RS, Alexiev I, Ivanov IN, Philipova I, Carrington CVF, Sahadeo NSD, Gurry C, Maurer-Stroh S, Naidoo D, von Eije KJ, Perkins MD, van Kerkhove M, Hill SC, Sabino EC, Pybus OG, Dye C, Bhatt S, Flaxman S, Suchard MA, Grubaugh ND, Baele G, Faria NR. Brito AF, et al. medRxiv [Preprint]. 2021 Dec 9:2021.08.21.21262393. doi: 10.1101/2021.08.21.21262393. medRxiv. 2021. PMID: 34462754 Free PMC article. Updated. Preprint.
Spatiotemporal invasion dynamics of SARS-CoV-2 lineage B.1.1.7 emergence.
Kraemer MUG, Hill V, Ruis C, Dellicour S, Bajaj S, McCrone JT, Baele G, Parag KV, Battle AL, Gutierrez B, Jackson B, Colquhoun R, O'Toole Á, Klein B, Vespignani A; COVID-19 Genomics UK (COG-UK) Consortium; Volz E, Faria NR, Aanensen DM, Loman NJ, du Plessis L, Cauchemez S, Rambaut A, Scarpino SV, Pybus OG. Kraemer MUG, et al. Science. 2021 Aug 20;373(6557):889-895. doi: 10.1126/science.abj0113. Epub 2021 Jul 22. Science. 2021. PMID: 34301854 Free PMC article.
Multiplex qPCR discriminates variants of concern to enhance global surveillance of SARS-CoV-2.
Vogels CBF, Breban MI, Ott IM, Alpert T, Petrone ME, Watkins AE, Kalinich CC, Earnest R, Rothman JE, Goes de Jesus J, Morales Claro I, Magalhães Ferreira G, Crispim MAE; Brazil-UK CADDE Genomic Network; Singh L, Tegally H, Anyaneji UJ; Network for Genomic Surveillance in South Africa; Hodcroft EB, Mason CE, Khullar G, Metti J, Dudley JT, MacKay MJ, Nash M, Wang J, Liu C, Hui P, Murphy S, Neal C, Laszlo E, Landry ML, Muyombwe A, Downing R, Razeq J, de Oliveira T, Faria NR, Sabino EC, Neher RA, Fauver JR, Grubaugh ND. Vogels CBF, et al. PLoS Biol. 2021 May 7;19(5):e3001236. doi: 10.1371/journal.pbio.3001236. eCollection 2021 May. PLoS Biol. 2021. PMID: 33961632 Free PMC article.
PCR assay to enhance global surveillance for SARS-CoV-2 variants of concern.
Vogels CBF, Breban MI, Alpert T, Petrone ME, Watkins AE, Ott IM, de Jesus JG, Claro IM, Ferreira GM, Crispim MAE; Brazil-UK CADDE Genomic Network; Singh L, Tegally H, Anyaneji UJ; NGS-SA; Hodcroft EB, Mason CE, Khullar G, Metti J, Dudley JT, MacKay MJ, Nash M, Wang J, Liu C, Hui P, Murphy S, Neal C, Laszlo E, Landry ML, Muyombwe A, Downing R, Razeq J, de Oliveira T, Faria NR, Sabino EC, Neher RA, Fauver JR, Grubaugh ND. Vogels CBF, et al. medRxiv [Preprint]. 2021 Mar 12:2021.01.28.21250486. doi: 10.1101/2021.01.28.21250486. medRxiv. 2021. PMID: 33758901 Free PMC article. Updated. Preprint.
90 results