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2021 3
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Expanding the boundaries of synthetic development.
Martyn I, Gartner ZJ. Martyn I, et al. Dev Biol. 2021 Jun;474:62-70. doi: 10.1016/j.ydbio.2021.01.017. Epub 2021 Feb 12. Dev Biol. 2021. PMID: 33587913 Free PMC article. Review.
Roadmap for the multiscale coupling of biochemical and mechanical signals during development.
Lenne PF, Munro E, Heemskerk I, Warmflash A, Bocanegra-Moreno L, Kishi K, Kicheva A, Long Y, Fruleux A, Boudaoud A, Saunders TE, Caldarelli P, Michaut A, Gros J, Maroudas-Sacks Y, Keren K, Hannezo E, Gartner ZJ, Stormo B, Gladfelter A, Rodrigues A, Shyer A, Minc N, Maître JL, Di Talia S, Khamaisi B, Sprinzak D, Tlili S. Lenne PF, et al. Phys Biol. 2021 Apr 14;18(4):10.1088/1478-3975/abd0db. doi: 10.1088/1478-3975/abd0db. Phys Biol. 2021. PMID: 33276350 Free PMC article. Review.
Epithelial zonation along the mouse and human small intestine defines five discrete metabolic domains.
Zwick RK, Kasparek P, Palikuqi B, Viragova S, Weichselbaum L, McGinnis CS, McKinley KL, Rathnayake A, Vaka D, Nguyen V, Trentesaux C, Reyes E, Gupta AR, Gartner ZJ, Locksley RM, Gardner JM, Itzkovitz S, Boffelli D, Klein OD. Zwick RK, et al. bioRxiv [Preprint]. 2023 Sep 22:2023.09.20.558726. doi: 10.1101/2023.09.20.558726. bioRxiv. 2023. PMID: 37790430 Free PMC article. Updated. Preprint.
deMULTIplex2: robust sample demultiplexing for scRNA-seq.
Zhu Q, Conrad DN, Gartner ZJ. Zhu Q, et al. bioRxiv [Preprint]. 2023 Apr 12:2023.04.11.536275. doi: 10.1101/2023.04.11.536275. bioRxiv. 2023. PMID: 37090649 Free PMC article. Updated. Preprint.
Patterning and folding of intestinal villi by active mesenchymal dewetting.
Huycke TR, Miyazaki H, Häkkinen TJ, Srivastava V, Barruet E, McGinnis CS, Kalantari A, Cornwall-Scoones J, Vaka D, Zhu Q, Jo H, DeGrado WF, Thomson M, Garikipati K, Boffelli D, Klein OD, Gartner ZJ. Huycke TR, et al. bioRxiv [Preprint]. 2023 Aug 15:2023.06.25.546328. doi: 10.1101/2023.06.25.546328. bioRxiv. 2023. PMID: 37425793 Free PMC article. Preprint.