R35 GM141457/GM/NIGMS NIH HHS/United States[Grants and Funding] - Search Results

Year	Number of Results
2022	2
2023	5
2024	1

1

Peptide-binding specificity prediction using fine-tuned protein structure prediction networks.

Motmaen A, Dauparas J, Baek M, Abedi MH, Baker D, Bradley P. Motmaen A, et al. Proc Natl Acad Sci U S A. 2023 Feb 28;120(9):e2216697120. doi: 10.1073/pnas.2216697120. Epub 2023 Feb 21. Proc Natl Acad Sci U S A. 2023. PMID: 36802421 Free PMC article.

2

Structure-based prediction of T cell receptor:peptide-MHC interactions.

Bradley P. Bradley P. Elife. 2023 Jan 20;12:e82813. doi: 10.7554/eLife.82813. Elife. 2023. PMID: 36661395 Free PMC article.

3

Comparing T cell receptor repertoires using optimal transport.

Olson BJ, Schattgen SA, Thomas PG, Bradley P, Matsen Iv FA. Olson BJ, et al. PLoS Comput Biol. 2022 Dec 7;18(12):e1010681. doi: 10.1371/journal.pcbi.1010681. eCollection 2022 Dec. PLoS Comput Biol. 2022. PMID: 36476997 Free PMC article.

4

De novo design of knotted tandem repeat proteins.

Doyle LA, Takushi B, Kibler RD, Milles LF, Orozco CT, Jones JD, Jackson SE, Stoddard BL, Bradley P. Doyle LA, et al. Nat Commun. 2023 Oct 24;14(1):6746. doi: 10.1038/s41467-023-42388-y. Nat Commun. 2023. PMID: 37875492 Free PMC article.

5

Convergent clonal selection of donor- and recipient-derived CMV-specific T cells in hematopoietic stem cell transplant patients.

Erickson JR, Stevens-Ayers T, Mair F, Edmison B, Boeckh M, Bradley P, Prlic M. Erickson JR, et al. Proc Natl Acad Sci U S A. 2022 Feb 8;119(6):e2117031119. doi: 10.1073/pnas.2117031119. Proc Natl Acad Sci U S A. 2022. PMID: 35105810 Free PMC article.

6

Neural network models for sequence-based TCR and HLA association prediction.

Liu S, Bradley P, Sun W. Liu S, et al. PLoS Comput Biol. 2023 Nov 20;19(11):e1011664. doi: 10.1371/journal.pcbi.1011664. eCollection 2023 Nov. PLoS Comput Biol. 2023. PMID: 37983288 Free PMC article.

7

Statistical inference reveals the role of length, GC content, and local sequence in V(D)J nucleotide trimming.

Russell ML, Simon N, Bradley P, Matsen FA 4th. Russell ML, et al. Elife. 2023 May 25;12:e85145. doi: 10.7554/eLife.85145. Elife. 2023. PMID: 37227256 Free PMC article.

8

Learning the shape of protein microenvironments with a holographic convolutional neural network.

Pun MN, Ivanov A, Bellamy Q, Montague Z, LaMont C, Bradley P, Otwinowski J, Nourmohammad A. Pun MN, et al. Proc Natl Acad Sci U S A. 2024 Feb 6;121(6):e2300838121. doi: 10.1073/pnas.2300838121. Epub 2024 Feb 1. Proc Natl Acad Sci U S A. 2024. PMID: 38300863 Free PMC article.

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