RC2 DK131995/DK/NIDDK NIH HHS/United States[Grants and Funding] - Search Results

Year	Number of Results
2022	1
2023	8
2024	2

1

GeneRanger and TargetRanger: processed gene and protein expression levels across cells and tissues for target discovery.

Marino GB, Ngai M, Clarke DJB, Fleishman RH, Deng EZ, Xie Z, Ahmed N, Ma'ayan A. Marino GB, et al. Nucleic Acids Res. 2023 Jul 5;51(W1):W213-W224. doi: 10.1093/nar/gkad399. Nucleic Acids Res. 2023. PMID: 37166966 Free PMC article.

2

D2H2: diabetes data and hypothesis hub.

Marino GB, Ahmed N, Xie Z, Jagodnik KM, Han J, Clarke DJB, Lachmann A, Keller MP, Attie AD, Ma'ayan A. Marino GB, et al. Bioinform Adv. 2023 Dec 4;3(1):vbad178. doi: 10.1093/bioadv/vbad178. eCollection 2023. Bioinform Adv. 2023. PMID: 38107655 Free PMC article.

3

Enrichr-KG: bridging enrichment analysis across multiple libraries.

Evangelista JE, Xie Z, Marino GB, Nguyen N, Clarke DJB, Ma'ayan A. Evangelista JE, et al. Nucleic Acids Res. 2023 Jul 5;51(W1):W168-W179. doi: 10.1093/nar/gkad393. Nucleic Acids Res. 2023. PMID: 37166973 Free PMC article.

4

Systems immunology-based drug repurposing framework to target inflammation in atherosclerosis.

Amadori L, Calcagno C, Fernandez DM, Koplev S, Fernandez N, Kaur R, Mury P, Khan NS, Sajja S, Shamailova R, Cyr Y, Jeon M, Hill CA, Chong PS, Naidu S, Sakurai K, Ghotbi AA, Soler R, Eberhardt N, Rahman A, Faries P, Moore KJ, Fayad ZA, Ma'ayan A, Giannarelli C. Amadori L, et al. Nat Cardiovasc Res. 2023 Jun;2(6):550-571. doi: 10.1038/s44161-023-00278-y. Epub 2023 Jun 8. Nat Cardiovasc Res. 2023. PMID: 37771373 Free PMC article.

5

lncHUB2: aggregated and inferred knowledge about human and mouse lncRNAs.

Marino GB, Wojciechowicz ML, Clarke DJB, Kuleshov MV, Xie Z, Jeon M, Lachmann A, Ma'ayan A. Marino GB, et al. Database (Oxford). 2023 Mar 4;2023:baad009. doi: 10.1093/database/baad009. Database (Oxford). 2023. PMID: 36869839 Free PMC article.

6

PrismEXP: gene annotation prediction from stratified gene-gene co-expression matrices.

Lachmann A, Rizzo KA, Bartal A, Jeon M, Clarke DJB, Ma'ayan A. Lachmann A, et al. PeerJ. 2023 Feb 27;11:e14927. doi: 10.7717/peerj.14927. eCollection 2023. PeerJ. 2023. PMID: 36874981 Free PMC article.

7

Transforming L1000 profiles to RNA-seq-like profiles with deep learning.

Jeon M, Xie Z, Evangelista JE, Wojciechowicz ML, Clarke DJB, Ma'ayan A. Jeon M, et al. BMC Bioinformatics. 2022 Sep 13;23(1):374. doi: 10.1186/s12859-022-04895-5. BMC Bioinformatics. 2022. PMID: 36100892 Free PMC article.

8

Dex-Benchmark: datasets and code to evaluate algorithms for transcriptomics data analysis.

Xie Z, Chen C, Ma'ayan A. Xie Z, et al. PeerJ. 2023 Nov 8;11:e16351. doi: 10.7717/peerj.16351. eCollection 2023. PeerJ. 2023. PMID: 37953774 Free PMC article.

9

Computational screen to identify potential targets for immunotherapeutic identification and removal of senescence cells.

Deng EZ, Fleishman RH, Xie Z, Marino GB, Clarke DJB, Ma'ayan A. Deng EZ, et al. Aging Cell. 2023 Jun;22(6):e13809. doi: 10.1111/acel.13809. Epub 2023 Apr 20. Aging Cell. 2023. PMID: 37082798 Free PMC article.

10

Rummagene: massive mining of gene sets from supporting materials of biomedical research publications.

Clarke DJB, Marino GB, Deng EZ, Xie Z, Evangelista JE, Ma'ayan A. Clarke DJB, et al. Commun Biol. 2024 Apr 20;7(1):482. doi: 10.1038/s42003-024-06177-7. Commun Biol. 2024. PMID: 38643247 Free PMC article.

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