U01 HG009417/HG/NHGRI NIH HHS/United States[Grants and Funding] - Search Results

Year	Number of Results
2016	1
2017	1
2018	5
2019	6
2020	2
2021	2
2022	1
2023	2
2024	1

1

Remodeling oncogenic transcriptomes by small molecules targeting NONO.

Kathman SG, Koo SJ, Lindsey GL, Her HL, Blue SM, Li H, Jaensch S, Remsberg JR, Ahn K, Yeo GW, Ghosh B, Cravatt BF. Kathman SG, et al. Nat Chem Biol. 2023 Jul;19(7):825-836. doi: 10.1038/s41589-023-01270-0. Epub 2023 Mar 2. Nat Chem Biol. 2023. PMID: 36864190 Free PMC article.

2

mountainClimber Identifies Alternative Transcription Start and Polyadenylation Sites in RNA-Seq.

Cass AA, Xiao X. Cass AA, et al. Cell Syst. 2019 Oct 23;9(4):393-400.e6. doi: 10.1016/j.cels.2019.07.011. Epub 2019 Sep 18. Cell Syst. 2019. PMID: 31542416 Free PMC article.

3

TAPAS: tool for alternative polyadenylation site analysis.

Arefeen A, Liu J, Xiao X, Jiang T. Arefeen A, et al. Bioinformatics. 2018 Aug 1;34(15):2521-2529. doi: 10.1093/bioinformatics/bty110. Bioinformatics. 2018. PMID: 30052912 Free PMC article.

4

Coregulation of alternative splicing by hnRNPM and ESRP1 during EMT.

Harvey SE, Xu Y, Lin X, Gao XD, Qiu Y, Ahn J, Xiao X, Cheng C. Harvey SE, et al. RNA. 2018 Oct;24(10):1326-1338. doi: 10.1261/rna.066712.118. Epub 2018 Jul 24. RNA. 2018. PMID: 30042172 Free PMC article.

5

Statistical inference of differential RNA-editing sites from RNA-sequencing data by hierarchical modeling.

Tran SS, Zhou Q, Xiao X. Tran SS, et al. Bioinformatics. 2020 May 1;36(9):2796-2804. doi: 10.1093/bioinformatics/btaa066. Bioinformatics. 2020. PMID: 32003773 Free PMC article.

6

DeepPASTA: deep neural network based polyadenylation site analysis.

Arefeen A, Xiao X, Jiang T. Arefeen A, et al. Bioinformatics. 2019 Nov 1;35(22):4577-4585. doi: 10.1093/bioinformatics/btz283. Bioinformatics. 2019. PMID: 31081512 Free PMC article.

7

Multifaceted role of RNA editing in promoting loss-of-function of PODXL in cancer.

Fu T, Chan TW, Bahn JH, Kim TH, Rowat AC, Xiao X. Fu T, et al. iScience. 2022 Aug 2;25(8):104836. doi: 10.1016/j.isci.2022.104836. eCollection 2022 Aug 19. iScience. 2022. PMID: 35992085 Free PMC article.

8

L-GIREMI uncovers RNA editing sites in long-read RNA-seq.

Liu Z, Quinones-Valdez G, Fu T, Huang E, Choudhury M, Reese F, Mortazavi A, Xiao X. Liu Z, et al. Genome Biol. 2023 Jul 20;24(1):171. doi: 10.1186/s13059-023-03012-w. Genome Biol. 2023. PMID: 37474948 Free PMC article.

9

Extracellular microRNA 3' end modification across diverse body fluids.

Koyano K, Bahn JH, Xiao X. Koyano K, et al. Epigenetics. 2021 Sep;16(9):1000-1015. doi: 10.1080/15592294.2020.1834922. Epub 2020 Nov 2. Epigenetics. 2021. PMID: 33092484 Free PMC article.

10

Structure-mediated modulation of mRNA abundance by A-to-I editing.

Brümmer A, Yang Y, Chan TW, Xiao X. Brümmer A, et al. Nat Commun. 2017 Nov 2;8(1):1255. doi: 10.1038/s41467-017-01459-7. Nat Commun. 2017. PMID: 29093448 Free PMC article.

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