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2008 1
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2012 13
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Page 1
Landscape of transcription in human cells.
Djebali S, Davis CA, Merkel A, Dobin A, Lassmann T, Mortazavi A, Tanzer A, Lagarde J, Lin W, Schlesinger F, Xue C, Marinov GK, Khatun J, Williams BA, Zaleski C, Rozowsky J, Röder M, Kokocinski F, Abdelhamid RF, Alioto T, Antoshechkin I, Baer MT, Bar NS, Batut P, Bell K, Bell I, Chakrabortty S, Chen X, Chrast J, Curado J, Derrien T, Drenkow J, Dumais E, Dumais J, Duttagupta R, Falconnet E, Fastuca M, Fejes-Toth K, Ferreira P, Foissac S, Fullwood MJ, Gao H, Gonzalez D, Gordon A, Gunawardena H, Howald C, Jha S, Johnson R, Kapranov P, King B, Kingswood C, Luo OJ, Park E, Persaud K, Preall JB, Ribeca P, Risk B, Robyr D, Sammeth M, Schaffer L, See LH, Shahab A, Skancke J, Suzuki AM, Takahashi H, Tilgner H, Trout D, Walters N, Wang H, Wrobel J, Yu Y, Ruan X, Hayashizaki Y, Harrow J, Gerstein M, Hubbard T, Reymond A, Antonarakis SE, Hannon G, Giddings MC, Ruan Y, Wold B, Carninci P, Guigó R, Gingeras TR. Djebali S, et al. Nature. 2012 Sep 6;489(7414):101-8. doi: 10.1038/nature11233. Nature. 2012. PMID: 22955620 Free PMC article.
The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression.
Derrien T, Johnson R, Bussotti G, Tanzer A, Djebali S, Tilgner H, Guernec G, Martin D, Merkel A, Knowles DG, Lagarde J, Veeravalli L, Ruan X, Ruan Y, Lassmann T, Carninci P, Brown JB, Lipovich L, Gonzalez JM, Thomas M, Davis CA, Shiekhattar R, Gingeras TR, Hubbard TJ, Notredame C, Harrow J, Guigó R. Derrien T, et al. Genome Res. 2012 Sep;22(9):1775-89. doi: 10.1101/gr.132159.111. Genome Res. 2012. PMID: 22955988 Free PMC article.
Mapping RNA-seq Reads with STAR.
Dobin A, Gingeras TR. Dobin A, et al. Curr Protoc Bioinformatics. 2015 Sep 3;51:11.14.1-11.14.19. doi: 10.1002/0471250953.bi1114s51. Curr Protoc Bioinformatics. 2015. PMID: 26334920 Free PMC article. Review.
Altruistic functions for selfish DNA.
Faulkner GJ, Carninci P. Faulkner GJ, et al. Cell Cycle. 2009 Sep 15;8(18):2895-900. doi: 10.4161/cc.8.18.9536. Cell Cycle. 2009. PMID: 19736519 Review.
Whole transcriptome analysis: what are we still missing?
Saxena A, Carninci P. Saxena A, et al. Wiley Interdiscip Rev Syst Biol Med. 2011 Sep-Oct;3(5):527-43. doi: 10.1002/wsbm.135. Epub 2010 Dec 31. Wiley Interdiscip Rev Syst Biol Med. 2011. PMID: 21197667 Review.
40 results