UM1 DA051410/DA/NIDA NIH HHS/United States[Grants and Funding] - Search Results

Year	Number of Results
2020	1
2021	7
2022	12
2023	7
2024	0

1

Single-cell multiomics reveals persistence of HIV-1 in expanded cytotoxic T cell clones.

Collora JA, Liu R, Pinto-Santini D, Ravindra N, Ganoza C, Lama JR, Alfaro R, Chiarella J, Spudich S, Mounzer K, Tebas P, Montaner LJ, van Dijk D, Duerr A, Ho YC. Collora JA, et al. Immunity. 2022 Jun 14;55(6):1013-1031.e7. doi: 10.1016/j.immuni.2022.03.004. Epub 2022 Mar 22. Immunity. 2022. PMID: 35320704 Free PMC article.

2

Single-cell epigenetic, transcriptional, and protein profiling of latent and active HIV-1 reservoir revealed that IKZF3 promotes HIV-1 persistence.

Wei Y, Davenport TC, Collora JA, Ma HK, Pinto-Santini D, Lama J, Alfaro R, Duerr A, Ho YC. Wei Y, et al. Immunity. 2023 Nov 14;56(11):2584-2601.e7. doi: 10.1016/j.immuni.2023.10.002. Epub 2023 Nov 2. Immunity. 2023. PMID: 37922905

3

Single-cell multiomic understanding of HIV-1 reservoir at epigenetic, transcriptional, and protein levels.

Wong M, Wei Y, Ho YC. Wong M, et al. Curr Opin HIV AIDS. 2023 Sep 1;18(5):246-256. doi: 10.1097/COH.0000000000000809. Epub 2023 Jul 17. Curr Opin HIV AIDS. 2023. PMID: 37535039 Review.

4

The Spectral Underpinning of word2vec.

Jaffe A, Kluger Y, Lindenbaum O, Patsenker J, Peterfreund E, Steinerberger S. Jaffe A, et al. Front Appl Math Stat. 2020 Dec;6:593406. doi: 10.3389/fams.2020.593406. Epub 2020 Dec 3. Front Appl Math Stat. 2020. PMID: 34504892 Free PMC article.

5

Detection of differentially abundant cell subpopulations in scRNA-seq data.

Zhao J, Jaffe A, Li H, Lindenbaum O, Sefik E, Jackson R, Cheng X, Flavell RA, Kluger Y. Zhao J, et al. Proc Natl Acad Sci U S A. 2021 Jun 1;118(22):e2100293118. doi: 10.1073/pnas.2100293118. Proc Natl Acad Sci U S A. 2021. PMID: 34001664 Free PMC article.

6

Zero-preserving imputation of single-cell RNA-seq data.

Linderman GC, Zhao J, Roulis M, Bielecki P, Flavell RA, Nadler B, Kluger Y. Linderman GC, et al. Nat Commun. 2022 Jan 11;13(1):192. doi: 10.1038/s41467-021-27729-z. Nat Commun. 2022. PMID: 35017482 Free PMC article.

7

Shock-and-kill versus block-and-lock: Targeting the fluctuating and heterogeneous HIV-1 gene expression.

Yeh YJ, Ho YC. Yeh YJ, et al. Proc Natl Acad Sci U S A. 2021 Apr 20;118(16):e2103692118. doi: 10.1073/pnas.2103692118. Proc Natl Acad Sci U S A. 2021. PMID: 33758027 Free PMC article. No abstract available.

8

HIV Compartmentalization in the CNS and Its Impact in Treatment Outcomes and Cure Strategies.

Chan P, Spudich S. Chan P, et al. Curr HIV/AIDS Rep. 2022 Jun;19(3):207-216. doi: 10.1007/s11904-022-00605-1. Epub 2022 May 10. Curr HIV/AIDS Rep. 2022. PMID: 35536438 Free PMC article. Review.

9

SIMVI reveals intrinsic and spatial-induced states in spatial omics data.

Dong M, Kluger H, Fan R, Kluger Y. Dong M, et al. bioRxiv [Preprint]. 2023 Aug 30:2023.08.28.554970. doi: 10.1101/2023.08.28.554970. bioRxiv. 2023. PMID: 37693629 Free PMC article. Preprint.

10

Integration site-dependent HIV-1 promoter activity shapes host chromatin conformation.

Collora JA, Ho YC. Collora JA, et al. Genome Res. 2023 Jun;33(6):891-906. doi: 10.1101/gr.277698.123. Epub 2023 Jun 9. Genome Res. 2023. PMID: 37295842 Free PMC article.

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