Alekseyenko AV - Search Results

1

Mapping the origins and expansion of the Indo-European language family.

Bouckaert R, Lemey P, Dunn M, Greenhill SJ, Alekseyenko AV, Drummond AJ, Gray RD, Suchard MA, Atkinson QD. Bouckaert R, et al. Among authors: alekseyenko av. Science. 2012 Aug 24;337(6097):957-60. doi: 10.1126/science.1219669. Science. 2012. PMID: 22923579 Free PMC article.

2

Testing spatiotemporal hypothesis of bacterial evolution using methicillin-resistant Staphylococcus aureus ST239 genome-wide data within a bayesian framework.

Gray RR, Tatem AJ, Johnson JA, Alekseyenko AV, Pybus OG, Suchard MA, Salemi M. Gray RR, et al. Among authors: alekseyenko av. Mol Biol Evol. 2011 May;28(5):1593-603. doi: 10.1093/molbev/msq319. Epub 2010 Nov 26. Mol Biol Evol. 2011. PMID: 21112962 Free PMC article.

3

Wagner and Dollo: a stochastic duet by composing two parsimonious solos.

Alekseyenko AV, Lee CJ, Suchard MA. Alekseyenko AV, et al. Syst Biol. 2008 Oct;57(5):772-84. doi: 10.1080/10635150802434394. Syst Biol. 2008. PMID: 18853363 Free PMC article.

4

Improving the accuracy of demographic and molecular clock model comparison while accommodating phylogenetic uncertainty.

Baele G, Lemey P, Bedford T, Rambaut A, Suchard MA, Alekseyenko AV. Baele G, et al. Among authors: alekseyenko av. Mol Biol Evol. 2012 Sep;29(9):2157-67. doi: 10.1093/molbev/mss084. Epub 2012 Mar 7. Mol Biol Evol. 2012. PMID: 22403239 Free PMC article.

5

A phylogenetic approach for weighting genetic sequences.

De Maio N, Alekseyenko AV, Coleman-Smith WJ, Pardi F, Suchard MA, Tamuri AU, Truszkowski J, Goldman N. De Maio N, et al. Among authors: alekseyenko av. BMC Bioinformatics. 2021 May 28;22(1):285. doi: 10.1186/s12859-021-04183-8. BMC Bioinformatics. 2021. PMID: 34049487 Free PMC article.

6

Global analysis of exon creation versus loss and the role of alternative splicing in 17 vertebrate genomes.

Alekseyenko AV, Kim N, Lee CJ. Alekseyenko AV, et al. RNA. 2007 May;13(5):661-70. doi: 10.1261/rna.325107. Epub 2007 Mar 16. RNA. 2007. PMID: 17369312 Free PMC article.

7

The ASAP II database: analysis and comparative genomics of alternative splicing in 15 animal species.

Kim N, Alekseyenko AV, Roy M, Lee C. Kim N, et al. Among authors: alekseyenko av. Nucleic Acids Res. 2007 Jan;35(Database issue):D93-8. doi: 10.1093/nar/gkl884. Epub 2006 Nov 15. Nucleic Acids Res. 2007. PMID: 17108355 Free PMC article.

8

Nested Containment List (NCList): a new algorithm for accelerating interval query of genome alignment and interval databases.

Alekseyenko AV, Lee CJ. Alekseyenko AV, et al. Bioinformatics. 2007 Jun 1;23(11):1386-93. doi: 10.1093/bioinformatics/btl647. Epub 2007 Jan 18. Bioinformatics. 2007. PMID: 17234640

9

Evidence for a subpopulation of conserved alternative splicing events under selection pressure for protein reading frame preservation.

Resch A, Xing Y, Alekseyenko A, Modrek B, Lee C. Resch A, et al. Nucleic Acids Res. 2004 Feb 24;32(4):1261-9. doi: 10.1093/nar/gkh284. Print 2004. Nucleic Acids Res. 2004. PMID: 14982953 Free PMC article.

10

Accurate stochastic simulation via the step anticipation tau-leaping (SAL) algorithm.

Sehl M, Alekseyenko AV, Lange KL. Sehl M, et al. Among authors: alekseyenko av. J Comput Biol. 2009 Sep;16(9):1195-208. doi: 10.1089/cmb.2008.0249. J Comput Biol. 2009. PMID: 19772431 Free PMC article.

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