Biggs MB - Search Results

1

Managing uncertainty in metabolic network structure and improving predictions using EnsembleFBA.

Biggs MB, Papin JA. Biggs MB, et al. PLoS Comput Biol. 2017 Mar 6;13(3):e1005413. doi: 10.1371/journal.pcbi.1005413. eCollection 2017 Mar. PLoS Comput Biol. 2017. PMID: 28263984 Free PMC article.

2

Inference of Network Dynamics and Metabolic Interactions in the Gut Microbiome.

Steinway SN, Biggs MB, Loughran TP Jr, Papin JA, Albert R. Steinway SN, et al. Among authors: biggs mb. PLoS Comput Biol. 2015 Jun 23;11(5):e1004338. doi: 10.1371/journal.pcbi.1004338. eCollection 2015 May. PLoS Comput Biol. 2015. PMID: 26102287 Free PMC article.

3

Metabolic network modeling of microbial communities.

Biggs MB, Medlock GL, Kolling GL, Papin JA. Biggs MB, et al. Wiley Interdiscip Rev Syst Biol Med. 2015 Sep-Oct;7(5):317-34. doi: 10.1002/wsbm.1308. Epub 2015 Jun 24. Wiley Interdiscip Rev Syst Biol Med. 2015. PMID: 26109480 Free PMC article. Review.

4

Metabolic network-guided binning of metagenomic sequence fragments.

Biggs MB, Papin JA. Biggs MB, et al. Bioinformatics. 2016 Mar 15;32(6):867-74. doi: 10.1093/bioinformatics/btv671. Epub 2015 Nov 14. Bioinformatics. 2016. PMID: 26568626 Free PMC article.

5

Novel multiscale modeling tool applied to Pseudomonas aeruginosa biofilm formation.

Biggs MB, Papin JA. Biggs MB, et al. PLoS One. 2013 Oct 17;8(10):e78011. doi: 10.1371/journal.pone.0078011. eCollection 2013. PLoS One. 2013. PMID: 24147108 Free PMC article.

6

Systems-level metabolism of the altered Schaedler flora, a complete gut microbiota.

Biggs MB, Medlock GL, Moutinho TJ, Lees HJ, Swann JR, Kolling GL, Papin JA. Biggs MB, et al. ISME J. 2017 Feb;11(2):426-438. doi: 10.1038/ismej.2016.130. Epub 2016 Nov 8. ISME J. 2017. PMID: 27824342 Free PMC article.

7

Growth-altering microbial interactions are responsive to chemical context.

Liu A, Archer AM, Biggs MB, Papin JA. Liu A, et al. Among authors: biggs mb. PLoS One. 2017 Mar 20;12(3):e0164919. doi: 10.1371/journal.pone.0164919. eCollection 2017. PLoS One. 2017. PMID: 28319121 Free PMC article.

8

Novel co-culture plate enables growth dynamic-based assessment of contact-independent microbial interactions.

Moutinho TJ Jr, Panagides JC, Biggs MB, Medlock GL, Kolling GL, Papin JA. Moutinho TJ Jr, et al. Among authors: biggs mb. PLoS One. 2017 Aug 2;12(8):e0182163. doi: 10.1371/journal.pone.0182163. eCollection 2017. PLoS One. 2017. PMID: 28767660 Free PMC article.

9

Enhancing Microbiome Research through Genome-Scale Metabolic Modeling.

Ankrah NYD, Bernstein DB, Biggs M, Carey M, Engevik M, García-Jiménez B, Lakshmanan M, Pacheco AR, Sulheim S, Medlock GL. Ankrah NYD, et al. mSystems. 2021 Dec 21;6(6):e0059921. doi: 10.1128/mSystems.00599-21. Epub 2021 Dec 14. mSystems. 2021. PMID: 34904863 Free PMC article.

10

Diverse environmental bacteria displaying activity against Phakopsora pachyrhizi, the cause of soybean rust.

Twizeyimana M, Hammer PE, Gachango E, Craig K, Espejo B, Biggs MB, Kremer J, Ingham DJ. Twizeyimana M, et al. Among authors: biggs mb. Front Plant Sci. 2023 Feb 1;14:1080116. doi: 10.3389/fpls.2023.1080116. eCollection 2023. Front Plant Sci. 2023. PMID: 36818841 Free PMC article.

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