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Circulating SARS-CoV-2 spike N439K variants maintain fitness while evading antibody-mediated immunity.
Cell. 2021 Mar 4;184(5):1171-1187.e20. doi: 10.1016/j.cell.2021.01.037. Epub 2021 Jan 28.
Cell. 2021.
PMID: 33621484
Free PMC article.
Evaluating the Effects of SARS-CoV-2 Spike Mutation D614G on Transmissibility and Pathogenicity.
Volz E, Hill V, McCrone JT, Price A, Jorgensen D, O'Toole Á, Southgate J, Johnson R, Jackson B, Nascimento FF, Rey SM, Nicholls SM, Colquhoun RM, da Silva Filipe A, Shepherd J, Pascall DJ, Shah R, Jesudason N, Li K, Jarrett R, Pacchiarini N, Bull M, Geidelberg L, Siveroni I; COG-UK Consortium; Goodfellow I, Loman NJ, Pybus OG, Robertson DL, Thomson EC, Rambaut A, Connor TR.
Volz E, et al. Among authors: colquhoun rm.
Cell. 2021 Jan 7;184(1):64-75.e11. doi: 10.1016/j.cell.2020.11.020. Epub 2020 Nov 19.
Cell. 2021.
PMID: 33275900
Free PMC article.
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Generation and transmission of interlineage recombinants in the SARS-CoV-2 pandemic.
Jackson B, Boni MF, Bull MJ, Colleran A, Colquhoun RM, Darby AC, Haldenby S, Hill V, Lucaci A, McCrone JT, Nicholls SM, O'Toole Á, Pacchiarini N, Poplawski R, Scher E, Todd F, Webster HJ, Whitehead M, Wierzbicki C; COVID-19 Genomics UK (COG-UK) Consortium; Loman NJ, Connor TR, Robertson DL, Pybus OG, Rambaut A.
Jackson B, et al. Among authors: colquhoun rm.
Cell. 2021 Sep 30;184(20):5179-5188.e8. doi: 10.1016/j.cell.2021.08.014. Epub 2021 Aug 17.
Cell. 2021.
PMID: 34499854
Free PMC article.
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CLIMB-COVID: continuous integration supporting decentralised sequencing for SARS-CoV-2 genomic surveillance.
Nicholls SM, Poplawski R, Bull MJ, Underwood A, Chapman M, Abu-Dahab K, Taylor B, Colquhoun RM, Rowe WPM, Jackson B, Hill V, O'Toole Á, Rey S, Southgate J, Amato R, Livett R, Gonçalves S, Harrison EM, Peacock SJ, Aanensen DM, Rambaut A, Connor TR, Loman NJ; COVID-19 Genomics UK (COG-UK) Consortium.
Nicholls SM, et al. Among authors: colquhoun rm.
Genome Biol. 2021 Jul 1;22(1):196. doi: 10.1186/s13059-021-02395-y.
Genome Biol. 2021.
PMID: 34210356
Free PMC article.
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Pandora: nucleotide-resolution bacterial pan-genomics with reference graphs.
Colquhoun RM, Hall MB, Lima L, Roberts LW, Malone KM, Hunt M, Letcher B, Hawkey J, George S, Pankhurst L, Iqbal Z.
Colquhoun RM, et al.
Genome Biol. 2021 Sep 14;22(1):267. doi: 10.1186/s13059-021-02473-1.
Genome Biol. 2021.
PMID: 34521456
Free PMC article.
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Minos: variant adjudication and joint genotyping of cohorts of bacterial genomes.
Hunt M, Letcher B, Malone KM, Nguyen G, Hall MB, Colquhoun RM, Lima L, Schatz MC, Ramakrishnan S; CRyPTIC consortium; Iqbal Z.
Hunt M, et al. Among authors: colquhoun rm.
Genome Biol. 2022 Jul 5;23(1):147. doi: 10.1186/s13059-022-02714-x.
Genome Biol. 2022.
PMID: 35791022
Free PMC article.
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Phylogenomic early warning signals for SARS-CoV-2 epidemic waves.
Drake KO, Boyd O, Franceschi VB, Colquhoun RM, Ellaby NAF, Volz EM.
Drake KO, et al. Among authors: colquhoun rm.
EBioMedicine. 2024 Feb;100:104939. doi: 10.1016/j.ebiom.2023.104939. Epub 2024 Jan 8.
EBioMedicine. 2024.
PMID: 38194742
Free PMC article.
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Open label trial of naltrexone implants: measuring blood serum levels of naltrexone.
Colquhoun RM.
Colquhoun RM.
Subst Abuse. 2013 May 15;7:75-84. doi: 10.4137/SART.S10776. Print 2013.
Subst Abuse. 2013.
PMID: 23761973
Free PMC article.
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