Drenkow J - Search Results

1

Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution.

Cheng J, Kapranov P, Drenkow J, Dike S, Brubaker S, Patel S, Long J, Stern D, Tammana H, Helt G, Sementchenko V, Piccolboni A, Bekiranov S, Bailey DK, Ganesh M, Ghosh S, Bell I, Gerhard DS, Gingeras TR. Cheng J, et al. Among authors: drenkow j. Science. 2005 May 20;308(5725):1149-54. doi: 10.1126/science.1108625. Epub 2005 Mar 24. Science. 2005. PMID: 15790807

2

Simultaneous genotyping and species identification using hybridization pattern recognition analysis of generic Mycobacterium DNA arrays.

Gingeras TR, Ghandour G, Wang E, Berno A, Small PM, Drobniewski F, Alland D, Desmond E, Holodniy M, Drenkow J. Gingeras TR, et al. Among authors: drenkow j. Genome Res. 1998 May;8(5):435-48. doi: 10.1101/gr.8.5.435. Genome Res. 1998. PMID: 9582189 Free article.

3

The transcriptional responses of respiratory epithelial cells to Bordetella pertussis reveal host defensive and pathogen counter-defensive strategies.

Belcher CE, Drenkow J, Kehoe B, Gingeras TR, McNamara N, Lemjabbar H, Basbaum C, Relman DA. Belcher CE, et al. Among authors: drenkow j. Proc Natl Acad Sci U S A. 2000 Dec 5;97(25):13847-52. doi: 10.1073/pnas.230262797. Proc Natl Acad Sci U S A. 2000. PMID: 11087813 Free PMC article.

4

Detection of deleted genomic DNA using a semiautomated computational analysis of GeneChip data.

Salamon H, Kato-Maeda M, Small PM, Drenkow J, Gingeras TR. Salamon H, et al. Among authors: drenkow j. Genome Res. 2000 Dec;10(12):2044-54. doi: 10.1101/gr.gr-1529r. Genome Res. 2000. PMID: 11116098 Free PMC article.

5

Reprogramming of the macrophage transcriptome in response to interferon-gamma and Mycobacterium tuberculosis: signaling roles of nitric oxide synthase-2 and phagocyte oxidase.

Ehrt S, Schnappinger D, Bekiranov S, Drenkow J, Shi S, Gingeras TR, Gaasterland T, Schoolnik G, Nathan C. Ehrt S, et al. Among authors: drenkow j. J Exp Med. 2001 Oct 15;194(8):1123-40. doi: 10.1084/jem.194.8.1123. J Exp Med. 2001. PMID: 11602641 Free PMC article.

6

Large-scale transcriptional activity in chromosomes 21 and 22.

Kapranov P, Cawley SE, Drenkow J, Bekiranov S, Strausberg RL, Fodor SP, Gingeras TR. Kapranov P, et al. Among authors: drenkow j. Science. 2002 May 3;296(5569):916-9. doi: 10.1126/science.1068597. Science. 2002. PMID: 11988577

7

Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs.

Cawley S, Bekiranov S, Ng HH, Kapranov P, Sekinger EA, Kampa D, Piccolboni A, Sementchenko V, Cheng J, Williams AJ, Wheeler R, Wong B, Drenkow J, Yamanaka M, Patel S, Brubaker S, Tammana H, Helt G, Struhl K, Gingeras TR. Cawley S, et al. Among authors: drenkow j. Cell. 2004 Feb 20;116(4):499-509. doi: 10.1016/s0092-8674(04)00127-8. Cell. 2004. PMID: 14980218 Free article.

8

Novel RNAs identified from an in-depth analysis of the transcriptome of human chromosomes 21 and 22.

Kampa D, Cheng J, Kapranov P, Yamanaka M, Brubaker S, Cawley S, Drenkow J, Piccolboni A, Bekiranov S, Helt G, Tammana H, Gingeras TR. Kampa D, et al. Among authors: drenkow j. Genome Res. 2004 Mar;14(3):331-42. doi: 10.1101/gr.2094104. Genome Res. 2004. PMID: 14993201 Free PMC article.

9

Examples of the complex architecture of the human transcriptome revealed by RACE and high-density tiling arrays.

Kapranov P, Drenkow J, Cheng J, Long J, Helt G, Dike S, Gingeras TR. Kapranov P, et al. Among authors: drenkow j. Genome Res. 2005 Jul;15(7):987-97. doi: 10.1101/gr.3455305. Genome Res. 2005. PMID: 15998911 Free PMC article.

10

Transcriptional landscape of the human and fly genomes: nonlinear and multifunctional modular model of transcriptomes.

Willingham AT, Dike S, Cheng J, Manak JR, Bell I, Cheung E, Drenkow J, Dumais E, Duttagupta R, Ganesh M, Ghosh S, Helt G, Nix D, Piccolboni A, Sementchenko V, Tammana H, Kapranov P; ENCODE Genes And Transcripts Group; Gingeras TR. Willingham AT, et al. Among authors: drenkow j. Cold Spring Harb Symp Quant Biol. 2006;71:101-10. doi: 10.1101/sqb.2006.71.068. Cold Spring Harb Symp Quant Biol. 2006. PMID: 17480199

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