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Tracking the COVID-19 pandemic in Australia using genomics.
Seemann T, Lane CR, Sherry NL, Duchene S, Gonçalves da Silva A, Caly L, Sait M, Ballard SA, Horan K, Schultz MB, Hoang T, Easton M, Dougall S, Stinear TP, Druce J, Catton M, Sutton B, van Diemen A, Alpren C, Williamson DA, Howden BP. Seemann T, et al. Among authors: duchene s. Nat Commun. 2020 Sep 1;11(1):4376. doi: 10.1038/s41467-020-18314-x. Nat Commun. 2020. PMID: 32873808 Free PMC article.
Atlas of group A streptococcal vaccine candidates compiled using large-scale comparative genomics.
Davies MR, McIntyre L, Mutreja A, Lacey JA, Lees JA, Towers RJ, Duchêne S, Smeesters PR, Frost HR, Price DJ, Holden MTG, David S, Giffard PM, Worthing KA, Seale AC, Berkley JA, Harris SR, Rivera-Hernandez T, Berking O, Cork AJ, Torres RSLA, Lithgow T, Strugnell RA, Bergmann R, Nitsche-Schmitz P, Chhatwal GS, Bentley SD, Fraser JD, Moreland NJ, Carapetis JR, Steer AC, Parkhill J, Saul A, Williamson DA, Currie BJ, Tong SYC, Dougan G, Walker MJ. Davies MR, et al. Among authors: duchene s. Nat Genet. 2019 Jun;51(6):1035-1043. doi: 10.1038/s41588-019-0417-8. Epub 2019 May 27. Nat Genet. 2019. PMID: 31133745 Free PMC article.
Limited Sustained Local Transmission of HIV-1 CRF01_AE in New South Wales, Australia.
Di Giallonardo F, Pinto AN, Keen P, Shaik A, Carrera A, Salem H, Telfer B, Cooper C, Price K, Selvey C, Holden J, Bachmann N, Lee FJ, Dwyer DE, Duchêne S, Holmes EC, Grulich AE, Kelleher AD. Di Giallonardo F, et al. Among authors: duchene s. Viruses. 2019 May 27;11(5):482. doi: 10.3390/v11050482. Viruses. 2019. PMID: 31137836 Free PMC article.
Author Correction: Atlas of group A streptococcal vaccine candidates compiled using large-scale comparative genomics.
Davies MR, McIntyre L, Mutreja A, Lacey JA, Lees JA, Towers RJ, Duchêne S, Smeesters PR, Frost HR, Price DJ, Holden MTG, David S, Giffard PM, Worthing KA, Seale AC, Berkley JA, Harris SR, Rivera-Hernandez T, Berking O, Cork AJ, Torres RSLA, Lithgow T, Strugnell RA, Bergmann R, Nitsche-Schmitz P, Chhatwal GS, Bentley SD, Fraser JD, Moreland NJ, Carapetis JR, Steer AC, Parkhill J, Saul A, Williamson DA, Currie BJ, Tong SYC, Dougan G, Walker MJ. Davies MR, et al. Among authors: duchene s. Nat Genet. 2019 Aug;51(8):1295. doi: 10.1038/s41588-019-0482-z. Nat Genet. 2019. PMID: 31324894
Evolution and Global Transmission of a Multidrug-Resistant, Community-Associated Methicillin-Resistant Staphylococcus aureus Lineage from the Indian Subcontinent.
Steinig EJ, Duchene S, Robinson DA, Monecke S, Yokoyama M, Laabei M, Slickers P, Andersson P, Williamson D, Kearns A, Goering RV, Dickson E, Ehricht R, Ip M, O'Sullivan MVN, Coombs GW, Petersen A, Brennan G, Shore AC, Coleman DC, Pantosti A, de Lencastre H, Westh H, Kobayashi N, Heffernan H, Strommenger B, Layer F, Weber S, Aamot HV, Skakni L, Peacock SJ, Sarovich D, Harris S, Parkhill J, Massey RC, Holden MTG, Bentley SD, Tong SYC. Steinig EJ, et al. Among authors: duchene s. mBio. 2019 Nov 26;10(6):e01105-19. doi: 10.1128/mBio.01105-19. mBio. 2019. PMID: 31772058 Free PMC article.
Genomic epidemiology reveals transmission patterns and dynamics of SARS-CoV-2 in Aotearoa New Zealand.
Geoghegan JL, Ren X, Storey M, Hadfield J, Jelley L, Jefferies S, Sherwood J, Paine S, Huang S, Douglas J, Mendes FK, Sporle A, Baker MG, Murdoch DR, French N, Simpson CR, Welch D, Drummond AJ, Holmes EC, Duchêne S, de Ligt J. Geoghegan JL, et al. Among authors: duchene s. Nat Commun. 2020 Dec 11;11(1):6351. doi: 10.1038/s41467-020-20235-8. Nat Commun. 2020. PMID: 33311501 Free PMC article.
Development of Phylodynamic Methods for Bacterial Pathogens.
Ingle DJ, Howden BP, Duchene S. Ingle DJ, et al. Among authors: duchene s. Trends Microbiol. 2021 Sep;29(9):788-797. doi: 10.1016/j.tim.2021.02.008. Epub 2021 Mar 15. Trends Microbiol. 2021. PMID: 33736902 Review.
Genomics-informed responses in the elimination of COVID-19 in Victoria, Australia: an observational, genomic epidemiological study.
Lane CR, Sherry NL, Porter AF, Duchene S, Horan K, Andersson P, Wilmot M, Turner A, Dougall S, Johnson SA, Sait M, Gonçalves da Silva A, Ballard SA, Hoang T, Stinear TP, Caly L, Sintchenko V, Graham R, McMahon J, Smith D, Leong LE, Meumann EM, Cooley L, Schwessinger B, Rawlinson W, van Hal SJ, Stephens N, Catton M, Looker C, Crouch S, Sutton B, Alpren C, Williamson DA, Seemann T, Howden BP. Lane CR, et al. Among authors: duchene s. Lancet Public Health. 2021 Aug;6(8):e547-e556. doi: 10.1016/S2468-2667(21)00133-X. Epub 2021 Jul 10. Lancet Public Health. 2021. PMID: 34252365 Free PMC article.
128 results