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Tracking the COVID-19 pandemic in Australia using genomics.
Seemann T, Lane CR, Sherry NL, Duchene S, Gonçalves da Silva A, Caly L, Sait M, Ballard SA, Horan K, Schultz MB, Hoang T, Easton M, Dougall S, Stinear TP, Druce J, Catton M, Sutton B, van Diemen A, Alpren C, Williamson DA, Howden BP. Seemann T, et al. Among authors: goncalves da silva a. Nat Commun. 2020 Sep 1;11(1):4376. doi: 10.1038/s41467-020-18314-x. Nat Commun. 2020. PMID: 32873808 Free PMC article.
NGMASTER:in silico multi-antigen sequence typing for Neisseria gonorrhoeae.
Kwong JC, Gonçalves da Silva A, Dyet K, Williamson DA, Stinear TP, Howden BP, Seemann T. Kwong JC, et al. Among authors: goncalves da silva a. Microb Genom. 2016 Aug 25;2(8):e000076. doi: 10.1099/mgen.0.000076. eCollection 2016 Aug. Microb Genom. 2016. PMID: 28348871 Free PMC article.
A phylogenomic framework for assessing the global emergence and evolution of clonal complex 398 methicillin-resistant Staphylococcus aureus.
Gonçalves da Silva A, Baines SL, Carter GP, Heffernan H, French NP, Ren X, Seemann T, Bulach D, Kwong J, Stinear TP, Howden BP, Williamson DA. Gonçalves da Silva A, et al. Microb Genom. 2017 Jan 31;3(1):e000105. doi: 10.1099/mgen.0.000105. eCollection 2017 Jan. Microb Genom. 2017. PMID: 28348878 Free PMC article.
Target-Specific Assay for Rapid and Quantitative Detection of Mycobacterium chimaera DNA.
Zozaya-Valdés E, Porter JL, Coventry J, Fyfe JAM, Carter GP, Gonçalves da Silva A, Schultz MB, Seemann T, Johnson PDR, Stewardson AJ, Bastian I, Roberts SA, Howden BP, Williamson DA, Stinear TP. Zozaya-Valdés E, et al. Among authors: goncalves da silva a. J Clin Microbiol. 2017 Jun;55(6):1847-1856. doi: 10.1128/JCM.00197-17. Epub 2017 Apr 5. J Clin Microbiol. 2017. PMID: 28381604 Free PMC article.
A Supervised Statistical Learning Approach for Accurate Legionella pneumophila Source Attribution during Outbreaks.
Buultjens AH, Chua KYL, Baines SL, Kwong J, Gao W, Cutcher Z, Adcock S, Ballard S, Schultz MB, Tomita T, Subasinghe N, Carter GP, Pidot SJ, Franklin L, Seemann T, Gonçalves Da Silva A, Howden BP, Stinear TP. Buultjens AH, et al. Among authors: goncalves da silva a. Appl Environ Microbiol. 2017 Oct 17;83(21):e01482-17. doi: 10.1128/AEM.01482-17. Print 2017 Nov 1. Appl Environ Microbiol. 2017. PMID: 28821546 Free PMC article.
Genomic epidemiology and antimicrobial resistance of Neisseria gonorrhoeae in New Zealand.
Lee RS, Seemann T, Heffernan H, Kwong JC, Gonçalves da Silva A, Carter GP, Woodhouse R, Dyet KH, Bulach DM, Stinear TP, Howden BP, Williamson DA. Lee RS, et al. Among authors: goncalves da silva a. J Antimicrob Chemother. 2018 Feb 1;73(2):353-364. doi: 10.1093/jac/dkx405. J Antimicrob Chemother. 2018. PMID: 29182725 Free PMC article.
Topical Antibiotic Use Coselects for the Carriage of Mobile Genetic Elements Conferring Resistance to Unrelated Antimicrobials in Staphylococcus aureus.
Carter GP, Schultz MB, Baines SL, Gonçalves da Silva A, Heffernan H, Tiong A, Pham PH, Monk IR, Stinear TP, Howden BP, Williamson DA. Carter GP, et al. Among authors: goncalves da silva a. Antimicrob Agents Chemother. 2018 Jan 25;62(2):e02000-17. doi: 10.1128/AAC.02000-17. Print 2018 Feb. Antimicrob Agents Chemother. 2018. PMID: 29229636 Free PMC article.
Translating genomics into practice for real-time surveillance and response to carbapenemase-producing Enterobacteriaceae: evidence from a complex multi-institutional KPC outbreak.
Kwong JC, Lane CR, Romanes F, Gonçalves da Silva A, Easton M, Cronin K, Waters MJ, Tomita T, Stevens K, Schultz MB, Baines SL, Sherry NL, Carter GP, Mu A, Sait M, Ballard SA, Seemann T, Stinear TP, Howden BP. Kwong JC, et al. Among authors: goncalves da silva a. PeerJ. 2018 Jan 3;6:e4210. doi: 10.7717/peerj.4210. eCollection 2018. PeerJ. 2018. PMID: 29312831 Free PMC article.
Convergent Evolution Driven by Rifampin Exacerbates the Global Burden of Drug-Resistant Staphylococcus aureus.
Guérillot R, Gonçalves da Silva A, Monk I, Giulieri S, Tomita T, Alison E, Porter J, Pidot S, Gao W, Peleg AY, Seemann T, Stinear TP, Howden BP. Guérillot R, et al. Among authors: goncalves da silva a. mSphere. 2018 Jan 24;3(1):e00550-17. doi: 10.1128/mSphere.00550-17. eCollection 2018 Jan-Feb. mSphere. 2018. PMID: 29404415 Free PMC article.
75 results