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Evaluating the Effects of SARS-CoV-2 Spike Mutation D614G on Transmissibility and Pathogenicity.
Volz E, Hill V, McCrone JT, Price A, Jorgensen D, O'Toole Á, Southgate J, Johnson R, Jackson B, Nascimento FF, Rey SM, Nicholls SM, Colquhoun RM, da Silva Filipe A, Shepherd J, Pascall DJ, Shah R, Jesudason N, Li K, Jarrett R, Pacchiarini N, Bull M, Geidelberg L, Siveroni I; COG-UK Consortium; Goodfellow I, Loman NJ, Pybus OG, Robertson DL, Thomson EC, Rambaut A, Connor TR. Volz E, et al. Among authors: johnson r. Cell. 2021 Jan 7;184(1):64-75.e11. doi: 10.1016/j.cell.2020.11.020. Epub 2020 Nov 19. Cell. 2021. PMID: 33275900 Free PMC article.
Genomic epidemiology of a densely sampled COVID-19 outbreak in China.
Geidelberg L, Boyd O, Jorgensen D, Siveroni I, Nascimento FF, Johnson R, Ragonnet-Cronin M, Fu H, Wang H, Xi X, Chen W, Liu D, Chen Y, Tian M, Tan W, Zai J, Sun W, Li J, Li J, Volz EM, Li X, Nie Q. Geidelberg L, et al. Among authors: johnson r. Virus Evol. 2021 Mar 14;7(1):veaa102. doi: 10.1093/ve/veaa102. eCollection 2021 Jan. Virus Evol. 2021. PMID: 33747543 Free PMC article.
Assessing transmissibility of SARS-CoV-2 lineage B.1.1.7 in England.
Volz E, Mishra S, Chand M, Barrett JC, Johnson R, Geidelberg L, Hinsley WR, Laydon DJ, Dabrera G, O'Toole Á, Amato R, Ragonnet-Cronin M, Harrison I, Jackson B, Ariani CV, Boyd O, Loman NJ, McCrone JT, Gonçalves S, Jorgensen D, Myers R, Hill V, Jackson DK, Gaythorpe K, Groves N, Sillitoe J, Kwiatkowski DP; COVID-19 Genomics UK (COG-UK) consortium; Flaxman S, Ratmann O, Bhatt S, Hopkins S, Gandy A, Rambaut A, Ferguson NM. Volz E, et al. Among authors: johnson r. Nature. 2021 May;593(7858):266-269. doi: 10.1038/s41586-021-03470-x. Epub 2021 Mar 25. Nature. 2021. PMID: 33767447 Free article.
The societal value of SARS-CoV-2 booster vaccination in Indonesia.
Johnson R, Djaafara B, Haw D, Doohan P, Forchini G, Pianella M, Ferguson N, Smith PC, Hauck KD. Johnson R, et al. Vaccine. 2023 Mar 10;41(11):1885-1891. doi: 10.1016/j.vaccine.2023.01.068. Epub 2023 Feb 1. Vaccine. 2023. PMID: 36781331 Free PMC article.
SYSBIONS: nested sampling for systems biology.
Johnson R, Kirk P, Stumpf MP. Johnson R, et al. Bioinformatics. 2015 Feb 15;31(4):604-5. doi: 10.1093/bioinformatics/btu675. Epub 2014 Oct 16. Bioinformatics. 2015. PMID: 25399028 Free PMC article.
The complexity of treatment-resistant depression: A data-driven approach.
Rost F, Booker T, Gonsard A, de Felice G, Asseburg L, Malda-Castillo J, Koutoufa I, Ridsdale H, Johnson R, Taylor D, Fonagy P. Rost F, et al. Among authors: johnson r. J Affect Disord. 2024 Apr 30:S0165-0327(24)00704-3. doi: 10.1016/j.jad.2024.04.093. Online ahead of print. J Affect Disord. 2024. PMID: 38697222
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