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IDseq-An open source cloud-based pipeline and analysis service for metagenomic pathogen detection and monitoring.
Gigascience. 2020 Oct 15;9(10):giaa111. doi: 10.1093/gigascience/giaa111.
Gigascience. 2020.
PMID: 33057676
Free PMC article.
Metagenomic next-generation sequencing of samples from pediatric febrile illness in Tororo, Uganda.
Ramesh A, Nakielny S, Hsu J, Kyohere M, Byaruhanga O, de Bourcy C, Egger R, Dimitrov B, Juan YF, Sheu J, Wang J, Kalantar K, Langelier C, Ruel T, Mpimbaza A, Wilson MR, Rosenthal PJ, DeRisi JL.
Ramesh A, et al. Among authors: juan yf.
PLoS One. 2019 Jun 20;14(6):e0218318. doi: 10.1371/journal.pone.0218318. eCollection 2019.
PLoS One. 2019.
PMID: 31220115
Free PMC article.
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Unbiased Metagenomic Sequencing for Pediatric Meningitis in Bangladesh Reveals Neuroinvasive Chikungunya Virus Outbreak and Other Unrealized Pathogens.
Saha S, Ramesh A, Kalantar K, Malaker R, Hasanuzzaman M, Khan LM, Mayday MY, Sajib MSI, Li LM, Langelier C, Rahman H, Crawford ED, Tato CM, Islam M, Juan YF, de Bourcy C, Dimitrov B, Wang J, Tang J, Sheu J, Egger R, De Carvalho TR, Wilson MR, Saha SK, DeRisi JL.
Saha S, et al. Among authors: juan yf.
mBio. 2019 Dec 17;10(6):e02877-19. doi: 10.1128/mBio.02877-19.
mBio. 2019.
PMID: 31848287
Free PMC article.
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Characterization of a mcr-1 and CRISPR-Cas System Co-harboring Plasmid in a Carbapenemase-Producing High-Risk ST11 Klebsiella pneumoniae Strain.
Cheng YH, Chou SH, Huang PH, Yang TC, Juan YF, Kreiswirth BN, Lin YT, Chen L.
Cheng YH, et al. Among authors: juan yf.
Front Microbiol. 2021 Oct 27;12:762947. doi: 10.3389/fmicb.2021.762947. eCollection 2021.
Front Microbiol. 2021.
PMID: 34777318
Free PMC article.
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