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Distinguishing regulatory DNA from neutral sites.
Elnitski L, Hardison RC, Li J, Yang S, Kolbe D, Eswara P, O'Connor MJ, Schwartz S, Miller W, Chiaromonte F. Elnitski L, et al. Among authors: miller w. Genome Res. 2003 Jan;13(1):64-72. doi: 10.1101/gr.817703. Genome Res. 2003. PMID: 12529307 Free PMC article.
Human-mouse alignments with BLASTZ.
Schwartz S, Kent WJ, Smit A, Zhang Z, Baertsch R, Hardison RC, Haussler D, Miller W. Schwartz S, et al. Among authors: miller w. Genome Res. 2003 Jan;13(1):103-7. doi: 10.1101/gr.809403. Genome Res. 2003. PMID: 12529312 Free PMC article.
GALA, a database for genomic sequence alignments and annotations.
Giardine B, Elnitski L, Riemer C, Makalowska I, Schwartz S, Miller W, Hardison RC. Giardine B, et al. Among authors: miller w. Genome Res. 2003 Apr;13(4):732-41. doi: 10.1101/gr.603103. Genome Res. 2003. PMID: 12671007 Free PMC article.
Experimental validation of predicted mammalian erythroid cis-regulatory modules.
Wang H, Zhang Y, Cheng Y, Zhou Y, King DC, Taylor J, Chiaromonte F, Kasturi J, Petrykowska H, Gibb B, Dorman C, Miller W, Dore LC, Welch J, Weiss MJ, Hardison RC. Wang H, et al. Among authors: miller w. Genome Res. 2006 Dec;16(12):1480-92. doi: 10.1101/gr.5353806. Epub 2006 Oct 12. Genome Res. 2006. PMID: 17038566 Free PMC article.
Finding cis-regulatory elements using comparative genomics: some lessons from ENCODE data.
King DC, Taylor J, Zhang Y, Cheng Y, Lawson HA, Martin J; ENCODE groups for Transcriptional Regulation and Multispecies Sequence Analysis; Chiaromonte F, Miller W, Hardison RC. King DC, et al. Among authors: miller w. Genome Res. 2007 Jun;17(6):775-86. doi: 10.1101/gr.5592107. Genome Res. 2007. PMID: 17567996 Free PMC article.
6,081 results