R35 GM119774/GM/NIGMS NIH HHS/United States[Grants and Funding] - Search Results

Year	Number of Results
2017	7
2018	7
2019	8
2020	9
2021	9
2022	8
2023	5
2024	6

1

Estimating the reproduction number and transmission heterogeneity from the size distribution of clusters of identical pathogen sequences.

Tran-Kiem C, Bedford T. Tran-Kiem C, et al. Proc Natl Acad Sci U S A. 2024 Apr 9;121(15):e2305299121. doi: 10.1073/pnas.2305299121. Epub 2024 Apr 3. Proc Natl Acad Sci U S A. 2024. PMID: 38568971 Free PMC article.

2

Integrating dynamical modeling and phylogeographic inference to characterize global influenza circulation.

Parino F, Gustani-Buss E, Bedford T, Suchard MA, Trovão NS, Rambaut A, Colizza V, Poletto C, Lemey P. Parino F, et al. medRxiv [Preprint]. 2024 Mar 15:2024.03.14.24303719. doi: 10.1101/2024.03.14.24303719. medRxiv. 2024. PMID: 38559244 Free PMC article. Preprint.

3

Local-scale phylodynamics reveal differential community impact of SARS-CoV-2 in a metropolitan US county.

Paredes MI, Perofsky AC, Frisbie L, Moncla LH, Roychoudhury P, Xie H, Bakhash SAM, Kong K, Arnould I, Nguyen TV, Wendm ST, Hajian P, Ellis S, Mathias PC, Greninger AL, Starita LM, Frazar CD, Ryke E, Zhong W, Gamboa L, Threlkeld M, Lee J, Stone J, McDermot E, Truong M, Shendure J, Oltean HN, Viboud C, Chu H, Müller NF, Bedford T. Paredes MI, et al. PLoS Pathog. 2024 Mar 26;20(3):e1012117. doi: 10.1371/journal.ppat.1012117. eCollection 2024 Mar. PLoS Pathog. 2024. PMID: 38530853 Free PMC article.

4

MASCOT-Skyline integrates population and migration dynamics to enhance phylogeographic reconstructions.

Müller NF, Bouckaert RR, Wu CH, Bedford T. Müller NF, et al. bioRxiv [Preprint]. 2024 Mar 13:2024.03.06.583734. doi: 10.1101/2024.03.06.583734. bioRxiv. 2024. PMID: 38496513 Free PMC article. Preprint.

5

Underdetected dispersal and extensive local transmission drove the 2022 mpox epidemic.

Paredes MI, Ahmed N, Figgins M, Colizza V, Lemey P, McCrone JT, Müller N, Tran-Kiem C, Bedford T. Paredes MI, et al. Cell. 2024 Mar 14;187(6):1374-1386.e13. doi: 10.1016/j.cell.2024.02.003. Epub 2024 Feb 29. Cell. 2024. PMID: 38428425 Free article.

6

Fitness models provide accurate short-term forecasts of SARS-CoV-2 variant frequency.

Abousamra E, Figgins M, Bedford T. Abousamra E, et al. medRxiv [Preprint]. 2024 Jan 22:2023.11.30.23299240. doi: 10.1101/2023.11.30.23299240. medRxiv. 2024. PMID: 38076866 Free PMC article. Preprint.

7

Antigenic drift and subtype interference shape A(H3N2) epidemic dynamics in the United States.

Perofsky AC, Huddleston J, Hansen C, Barnes JR, Rowe T, Xu X, Kondor R, Wentworth DE, Lewis N, Whittaker L, Ermetal B, Harvey R, Galiano M, Daniels RS, McCauley JW, Fujisaki S, Nakamura K, Kishida N, Watanabe S, Hasegawa H, Sullivan SG, Barr IG, Subbarao K, Krammer F, Bedford T, Viboud C. Perofsky AC, et al. medRxiv [Preprint]. 2023 Oct 3:2023.10.02.23296453. doi: 10.1101/2023.10.02.23296453. medRxiv. 2023. PMID: 37873362 Free PMC article. Preprint.

8

Early underdetected dissemination across countries followed by extensive local transmission propelled the 2022 mpox epidemic.

Paredes MI, Ahmed N, Figgins M, Colizza V, Lemey P, McCrone JT, Müller N, Tran-Kiem C, Bedford T. Paredes MI, et al. medRxiv [Preprint]. 2023 Dec 7:2023.07.27.23293266. doi: 10.1101/2023.07.27.23293266. medRxiv. 2023. PMID: 37577709 Free PMC article. Updated. Preprint.

9

Phylodynamics Uncovers the Transmission of Antibiotic-Resistant Escherichia coli between Canines and Humans in an Urban Environment.

Walas N, Müller NF, Parker E, Henderson A, Capone D, Brown J, Barker T, Graham JP. Walas N, et al. bioRxiv [Preprint]. 2023 Jun 1:2023.06.01.543064. doi: 10.1101/2023.06.01.543064. bioRxiv. 2023. PMID: 37398411 Free PMC article. Preprint.

10

Fitting stochastic epidemic models to gene genealogies using linear noise approximation.

Tang M, Dudas G, Bedford T, Minin VN. Tang M, et al. Ann Appl Stat. 2023 Mar;17(1):1-22. doi: 10.1214/21-aoas1583. Epub 2023 Jan 24. Ann Appl Stat. 2023. PMID: 37273682 Free PMC article.

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