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Genomic epidemiology reveals transmission patterns and dynamics of SARS-CoV-2 in Aotearoa New Zealand.
Geoghegan JL, Ren X, Storey M, Hadfield J, Jelley L, Jefferies S, Sherwood J, Paine S, Huang S, Douglas J, Mendes FK, Sporle A, Baker MG, Murdoch DR, French N, Simpson CR, Welch D, Drummond AJ, Holmes EC, Duchêne S, de Ligt J. Geoghegan JL, et al. Among authors: ren x. Nat Commun. 2020 Dec 11;11(1):6351. doi: 10.1038/s41467-020-20235-8. Nat Commun. 2020. PMID: 33311501 Free PMC article.
Genomic Evidence of In-Flight Transmission of SARS-CoV-2 Despite Predeparture Testing.
Swadi T, Geoghegan JL, Devine T, McElnay C, Sherwood J, Shoemack P, Ren X, Storey M, Jefferies S, Smit E, Hadfield J, Kenny A, Jelley L, Sporle A, McNeill A, Reynolds GE, Mouldey K, Lowe L, Sonder G, Drummond AJ, Huang S, Welch D, Holmes EC, French N, Simpson CR, de Ligt J. Swadi T, et al. Among authors: ren x. Emerg Infect Dis. 2021 Mar;27(3):687-693. doi: 10.3201/eid2703.204714. Epub 2021 Jan 5. Emerg Infect Dis. 2021. PMID: 33400642 Free PMC article. Review.
Transmission of Severe Acute Respiratory Syndrome Coronavirus 2 during Border Quarantine and Air Travel, New Zealand (Aotearoa).
Eichler N, Thornley C, Swadi T, Devine T, McElnay C, Sherwood J, Brunton C, Williamson F, Freeman J, Berger S, Ren X, Storey M, de Ligt J, Geoghegan JL. Eichler N, et al. Among authors: ren x. Emerg Infect Dis. 2021 May;27(5):1274-1278. doi: 10.3201/eid2705.210514. Epub 2021 Mar 18. Emerg Infect Dis. 2021. PMID: 33734063 Free PMC article. Review.
Use of Genomics to Track Coronavirus Disease Outbreaks, New Zealand.
Geoghegan JL, Douglas J, Ren X, Storey M, Hadfield J, Silander OK, Freed NE, Jelley L, Jefferies S, Sherwood J, Paine S, Huang S, Sporle A, Baker MG, Murdoch DR, Drummond AJ, Welch D, Simpson CR, French N, Holmes EC, de Ligt J. Geoghegan JL, et al. Among authors: ren x. Emerg Infect Dis. 2021 May;27(5):1317-1322. doi: 10.3201/eid2705.204579. Emerg Infect Dis. 2021. PMID: 33900175 Free PMC article.
Phylodynamics reveals the role of human travel and contact tracing in controlling the first wave of COVID-19 in four island nations.
Douglas J, Mendes FK, Bouckaert R, Xie D, Jiménez-Silva CL, Swanepoel C, de Ligt J, Ren X, Storey M, Hadfield J, Simpson CR, Geoghegan JL, Drummond AJ, Welch D. Douglas J, et al. Among authors: ren x. Virus Evol. 2021 Jun 8;7(2):veab052. doi: 10.1093/ve/veab052. eCollection 2021. Virus Evol. 2021. PMID: 34527282 Free PMC article.
Impact of the COVID-19 related border restrictions on influenza and other common respiratory viral infections in New Zealand.
Huang QS, Turner N, Wood T, Anglemyer A, McIntyre P, Aminisani N, Dowell T, Trenholme A, Byrnes C, Balm M, McIntosh C, Jefferies S, Grant CC, Nesdale A, Dobinson HC, Campbell-Stokes P, Daniells K, Geoghegan J, de Ligt J, Jelley L, Seeds R, Jennings T, Rensburg M, Cueto J, Caballero E, John J, Penghulan E, Tan CE, Ren X, Berquist K, O'Neill M, Marull M, Yu C, McNeill A, Kiedrzynski T, Roberts S, McArthur C, Stanley A, Taylor S, Wong C, Lawrence S, Baker MG, Kvalsvig A, Van Der Werff K, McAuliffe G, Antoszewska H, Dilcher M, Fahey J, Werno A, Elvy J, Grant J, Addidle M, Zacchi N, Mansell C, Widdowson MA, Thomas PG; BorderRestrictionImpactOnFluRSV Consortium; Webby RJ. Huang QS, et al. Among authors: ren x. Influenza Other Respir Viruses. 2024 Feb;18(2):e13247. doi: 10.1111/irv.13247. Influenza Other Respir Viruses. 2024. PMID: 38350715 Free PMC article.
An emergent clade of SARS-CoV-2 linked to returned travellers from Iran.
Eden JS, Rockett R, Carter I, Rahman H, de Ligt J, Hadfield J, Storey M, Ren X, Tulloch R, Basile K, Wells J, Byun R, Gilroy N, O'Sullivan MV, Sintchenko V, Chen SC, Maddocks S, Sorrell TC, Holmes EC, Dwyer DE, Kok J; 2019-nCoV Study Group. Eden JS, et al. Among authors: ren x. Virus Evol. 2020 Apr 10;6(1):veaa027. doi: 10.1093/ve/veaa027. eCollection 2020 Jan. Virus Evol. 2020. PMID: 32296544 Free PMC article.
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