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Temporal genomic analysis of melanoma rejection identifies regulators of tumor immune evasion.
Cohen Shvefel S, Pai JA, Cao Y, Pal LR, Levy R, Yao W, Cheng K, Zemanek M, Bartok O, Weller C, Yin Y, Du PP, Yakubovich E, Orr I, Ben-Dor S, Oren R, Fellus-Alyagor L, Golani O, Goliand I, Ranmar D, Savchenko I, Ketrarou N, Schäffer AA, Ruppin E, Satpathy AT, Samuels Y. Cohen Shvefel S, et al. Among authors: ruppin e. bioRxiv [Preprint]. 2023 Nov 29:2023.11.29.569032. doi: 10.1101/2023.11.29.569032. bioRxiv. 2023. PMID: 38077050 Free PMC article. Preprint.
Chromosome 7 to the rescue: overcoming chromosome 10 loss in gliomas.
Nair NU, Schäffer AA, Gertz EM, Cheng K, Zerbib J, Sahu AD, Leor G, Shulman ED, Aldape KD, Ben-David U, Ruppin E. Nair NU, et al. Among authors: ruppin e. bioRxiv [Preprint]. 2024 Jan 22:2024.01.17.576103. doi: 10.1101/2024.01.17.576103. bioRxiv. 2024. PMID: 38313282 Free PMC article. Preprint.
Synthetic lethality-based prediction of anti-SARS-CoV-2 targets.
Pal LR, Cheng K, Nair NU, Martin-Sancho L, Sinha S, Pu Y, Riva L, Yin X, Schischlik F, Lee JS, Chanda SK, Ruppin E. Pal LR, et al. Among authors: ruppin e. bioRxiv [Preprint]. 2021 Sep 15:2021.09.14.460408. doi: 10.1101/2021.09.14.460408. bioRxiv. 2021. PMID: 34545363 Free PMC article. Updated. Preprint.
PERCEPTION predicts patient response and resistance to treatment using single-cell transcriptomics of their tumors.
Sinha S, Vegesna R, Mukherjee S, Kammula AV, Dhruba SR, Wu W, Kerr DL, Nair NU, Jones MG, Yosef N, Stroganov OV, Grishagin I, Aldape KD, Blakely CM, Jiang P, Thomas CJ, Benes CH, Bivona TG, Schäffer AA, Ruppin E. Sinha S, et al. Among authors: ruppin e. Nat Cancer. 2024 Apr 18. doi: 10.1038/s43018-024-00756-7. Online ahead of print. Nat Cancer. 2024. PMID: 38637658
Outcome differences by sex in oncology clinical trials.
Kammula AV, Schäffer AA, Rajagopal PS, Kurzrock R, Ruppin E. Kammula AV, et al. Among authors: ruppin e. Nat Commun. 2024 Mar 23;15(1):2608. doi: 10.1038/s41467-024-46945-x. Nat Commun. 2024. PMID: 38521835 Free PMC article.
Transcriptomic Profiling of Plasma Extracellular Vesicles Enables Reliable Annotation of the Cancer-specific Transcriptome and Molecular Subtype.
Bahrambeigi V, Lee JJ, Branchi V, Rajapakshe KI, Xu Z, Kui N, Henry JT, Wang K, Stephens BM, Dhebat S, Hurd MW, Sun R, Yang P, Ruppin E, Wang W, Kopetz S, Maitra A, Guerrero PA. Bahrambeigi V, et al. Among authors: ruppin e. Cancer Res. 2024 Mar 7. doi: 10.1158/0008-5472.CAN-23-4070. Online ahead of print. Cancer Res. 2024. PMID: 38451249
331 results