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Tracking the COVID-19 pandemic in Australia using genomics.
Seemann T, Lane CR, Sherry NL, Duchene S, Gonçalves da Silva A, Caly L, Sait M, Ballard SA, Horan K, Schultz MB, Hoang T, Easton M, Dougall S, Stinear TP, Druce J, Catton M, Sutton B, van Diemen A, Alpren C, Williamson DA, Howden BP. Seemann T, et al. Among authors: sait m. Nat Commun. 2020 Sep 1;11(1):4376. doi: 10.1038/s41467-020-18314-x. Nat Commun. 2020. PMID: 32873808 Free PMC article.
Genomics for Molecular Epidemiology and Detecting Transmission of Carbapenemase-Producing Enterobacterales in Victoria, Australia, 2012 to 2016.
Sherry NL, Lane CR, Kwong JC, Schultz M, Sait M, Stevens K, Ballard S, Gonçalves da Silva A, Seemann T, Gorrie CL, Stinear TP, Williamson DA, Brett J, van Diemen A, Easton M, Howden BP. Sherry NL, et al. Among authors: sait m. J Clin Microbiol. 2019 Aug 26;57(9):e00573-19. doi: 10.1128/JCM.00573-19. Print 2019 Sep. J Clin Microbiol. 2019. PMID: 31315956 Free PMC article.
Genomics-informed responses in the elimination of COVID-19 in Victoria, Australia: an observational, genomic epidemiological study.
Lane CR, Sherry NL, Porter AF, Duchene S, Horan K, Andersson P, Wilmot M, Turner A, Dougall S, Johnson SA, Sait M, Gonçalves da Silva A, Ballard SA, Hoang T, Stinear TP, Caly L, Sintchenko V, Graham R, McMahon J, Smith D, Leong LE, Meumann EM, Cooley L, Schwessinger B, Rawlinson W, van Hal SJ, Stephens N, Catton M, Looker C, Crouch S, Sutton B, Alpren C, Williamson DA, Seemann T, Howden BP. Lane CR, et al. Among authors: sait m. Lancet Public Health. 2021 Aug;6(8):e547-e556. doi: 10.1016/S2468-2667(21)00133-X. Epub 2021 Jul 10. Lancet Public Health. 2021. PMID: 34252365 Free PMC article.
COVID-19: Integrating genomic and epidemiological data to inform public health interventions and policy in Tasmania, Australia.
Stephens N, McPherson M, Cooley L, Vanhaeften R, Wilmot M, Lane C, Harlock M, Lodo K, Castree N, Seemann T, Sait M, Ballard S, Horan K, Veitch M, Johnston F, Sherry N, Howden B. Stephens N, et al. Among authors: sait m. Western Pac Surveill Response J. 2021 Dec 22;12(4):1-9. doi: 10.5365/wpsar.2021.12.4.878. eCollection 2021 Oct-Dec. Western Pac Surveill Response J. 2021. PMID: 35251740 Free PMC article.
Translating genomics into practice for real-time surveillance and response to carbapenemase-producing Enterobacteriaceae: evidence from a complex multi-institutional KPC outbreak.
Kwong JC, Lane CR, Romanes F, Gonçalves da Silva A, Easton M, Cronin K, Waters MJ, Tomita T, Stevens K, Schultz MB, Baines SL, Sherry NL, Carter GP, Mu A, Sait M, Ballard SA, Seemann T, Stinear TP, Howden BP. Kwong JC, et al. Among authors: sait m. PeerJ. 2018 Jan 3;6:e4210. doi: 10.7717/peerj.4210. eCollection 2018. PeerJ. 2018. PMID: 29312831 Free PMC article.
Incorporating Whole-Genome Sequencing into Public Health Surveillance: Lessons from Prospective Sequencing of Salmonella Typhimurium in Australia.
Ford L, Carter GP, Wang Q, Seemann T, Sintchenko V, Glass K, Williamson DA, Howard P, Valcanis M, Castillo CFS, Sait M, Howden BP, Kirk MD. Ford L, et al. Among authors: sait m. Foodborne Pathog Dis. 2018 Mar;15(3):161-167. doi: 10.1089/fpd.2017.2352. Epub 2018 Jan 16. Foodborne Pathog Dis. 2018. PMID: 29336594
Search and Contain: Impact of an Integrated Genomic and Epidemiological Surveillance and Response Program for Control of Carbapenemase-producing Enterobacterales.
Lane CR, Brett J, Schultz M, Gorrie CL, Stevens K, Cameron DRM, St George S, van Diemen A, Easton M, Stuart RL, Sait M, Peleg AY, Stewardson AJ, Cheng AC, Spelman DW, Waters MJ, Ballard SA, Sherry NL, Williamson DA, Romanes F, Sutton B, Kwong JC, Seemann T, Goncalves da Silva A, Stephens N, Howden BP. Lane CR, et al. Among authors: sait m. Clin Infect Dis. 2021 Dec 6;73(11):e3912-e3920. doi: 10.1093/cid/ciaa972. Clin Infect Dis. 2021. PMID: 32663248 Free PMC article.
Validation of a single-step, single-tube reverse transcription loop-mediated isothermal amplification assay for rapid detection of SARS-CoV-2 RNA.
Lee JYH, Best N, McAuley J, Porter JL, Seemann T, Schultz MB, Sait M, Orlando N, Mercoulia K, Ballard SA, Druce J, Tran T, Catton MG, Pryor MJ, Cui HL, Luttick A, McDonald S, Greenhalgh A, Kwong JC, Sherry NL, Graham M, Hoang T, Herisse M, Pidot SJ, Williamson DA, Howden BP, Monk IR, Stinear TP. Lee JYH, et al. Among authors: sait m. J Med Microbiol. 2020 Sep;69(9):1169-1178. doi: 10.1099/jmm.0.001238. Epub 2020 Jul 31. J Med Microbiol. 2020. PMID: 32755529 Free PMC article.
Lab-in-a-van: Rapid SARS-CoV-2 testing response with a mobile laboratory.
Ballard SA, Graham M, David D, Hoang T, Donald A, Sait M, Isles N, Matlock A, Yallop S, Bek M, Howden BP, Stinear TP. Ballard SA, et al. Among authors: sait m. EBioMedicine. 2022 May;79:103983. doi: 10.1016/j.ebiom.2022.103983. Epub 2022 Apr 8. EBioMedicine. 2022. PMID: 35405388 Free PMC article.
111 results