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Genomic evidence for reinfection with SARS-CoV-2: a case study.
Tillett RL, Sevinsky JR, Hartley PD, Kerwin H, Crawford N, Gorzalski A, Laverdure C, Verma SC, Rossetto CC, Jackson D, Farrell MJ, Van Hooser S, Pandori M. Tillett RL, et al. Among authors: sevinsky jr. Lancet Infect Dis. 2021 Jan;21(1):52-58. doi: 10.1016/S1473-3099(20)30764-7. Epub 2020 Oct 12. Lancet Infect Dis. 2021. PMID: 33058797 Free PMC article.
Genomic surveillance of Nevada patients revealed prevalence of unique SARS-CoV-2 variants bearing mutations in the RdRp gene.
Hartley PD, Tillett RL, AuCoin DP, Sevinsky JR, Xu Y, Gorzalski A, Pandori M, Buttery E, Hansen H, Picker MA, Rossetto CC, Verma SC. Hartley PD, et al. Among authors: sevinsky jr. medRxiv [Preprint]. 2020 Oct 2:2020.08.21.20178863. doi: 10.1101/2020.08.21.20178863. medRxiv. 2020. PMID: 32869037 Free PMC article. Updated. Preprint.
Rapid Lineage Assignment of Severe Acute Respiratory Syndrome Coronavirus 2 Cases through Automated Library Preparation, Sequencing, and Bioinformatic Analysis.
Gorzalski AJ, Kerwin H, Verma S, Hess DC, Sevinsky J, Libuit K, Vlasova-St Louis I, Siao D, Siao L, Buñuel D, Van Hooser S, Pandori MW. Gorzalski AJ, et al. J Mol Diagn. 2023 Apr;25(4):191-196. doi: 10.1016/j.jmoldx.2023.01.005. Epub 2023 Feb 7. J Mol Diagn. 2023. PMID: 36754279 Free PMC article.
GAMBIT (Genomic Approximation Method for Bacterial Identification and Tracking): A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.
Lumpe J, Gumbleton L, Gorzalski A, Libuit K, Varghese V, Lloyd T, Tadros F, Arsimendi T, Wagner E, Stephens C, Sevinsky J, Hess D, Pandori M. Lumpe J, et al. PLoS One. 2023 Feb 16;18(2):e0277575. doi: 10.1371/journal.pone.0277575. eCollection 2023. PLoS One. 2023. PMID: 36795668 Free PMC article.
Pathogen genomics in public health laboratories: successes, challenges, and lessons learned from California's SARS-CoV-2 Whole-Genome Sequencing Initiative, California COVIDNet.
Smith EA, Libuit KG, Kapsak CJ, Scribner MR, Wright SM, Bell J, Morales C, Crumpler M, Messenger S, Hacker JK, Ledin K, Glaser C, Jacobson K, Sevinsky JR, Wadford DA. Smith EA, et al. Among authors: sevinsky jr. Microb Genom. 2023 Jun;9(6):mgen001027. doi: 10.1099/mgen.0.001027. Microb Genom. 2023. PMID: 37267020 Free PMC article.
The use of whole-genome sequencing and development of bioinformatics to monitor overlapping outbreaks of Candida auris in southern Nevada.
Gorzalski A, Ambrosio FJ 3rd, Massic L, Scribner MR, Siao DD, Hua C, Dykema P, Schneider E, Njoku C, Libuit K, Sevinsky JR, Van Hooser S, Pandori M, Hess D. Gorzalski A, et al. Among authors: sevinsky jr. Front Public Health. 2023 Jul 13;11:1198189. doi: 10.3389/fpubh.2023.1198189. eCollection 2023. Front Public Health. 2023. PMID: 37522005 Free PMC article.
TheiaEuk: a species-agnostic bioinformatics workflow for fungal genomic characterization.
Ambrosio FJ 3rd, Scribner MR, Wright SM, Otieno JR, Doughty EL, Gorzalski A, Siao DD, Killian S, Hua C, Schneider E, Tran M, Varghese V, Libuit KG, Pandori M, Sevinsky JR, Hess D. Ambrosio FJ 3rd, et al. Among authors: sevinsky jr. Front Public Health. 2023 Aug 1;11:1198213. doi: 10.3389/fpubh.2023.1198213. eCollection 2023. Front Public Health. 2023. PMID: 37593727 Free PMC article.
Implementation of California COVIDNet - a multi-sector collaboration for statewide SARS-CoV-2 genomic surveillance.
Wadford DA, Baumrind N, Baylis EF, Bell JM, Bouchard EL, Crumpler M, Foote EM, Gilliam S, Glaser CA, Hacker JK, Ledin K, Messenger SL, Morales C, Smith EA, Sevinsky JR, Corbett-Detig RB, DeRisi J, Jacobson K. Wadford DA, et al. Among authors: sevinsky jr. Front Public Health. 2023 Oct 23;11:1249614. doi: 10.3389/fpubh.2023.1249614. eCollection 2023. Front Public Health. 2023. PMID: 37937074 Free PMC article.
26 results