Shim JE - Search Results

1

GWAB: a web server for the network-based boosting of human genome-wide association data.

Shim JE, Bang C, Yang S, Lee T, Hwang S, Kim CY, Singh-Blom UM, Marcotte EM, Lee I. Shim JE, et al. Nucleic Acids Res. 2017 Jul 3;45(W1):W154-W161. doi: 10.1093/nar/gkx284. Nucleic Acids Res. 2017. PMID: 28449091 Free PMC article.

2

Prioritizing candidate disease genes by network-based boosting of genome-wide association data.

Lee I, Blom UM, Wang PI, Shim JE, Marcotte EM. Lee I, et al. Among authors: shim je. Genome Res. 2011 Jul;21(7):1109-21. doi: 10.1101/gr.118992.110. Epub 2011 May 2. Genome Res. 2011. PMID: 21536720 Free PMC article.

3

AraNet v2: an improved database of co-functional gene networks for the study of Arabidopsis thaliana and 27 other nonmodel plant species.

Lee T, Yang S, Kim E, Ko Y, Hwang S, Shin J, Shim JE, Shim H, Kim H, Kim C, Lee I. Lee T, et al. Among authors: shim h, shim je. Nucleic Acids Res. 2015 Jan;43(Database issue):D996-1002. doi: 10.1093/nar/gku1053. Epub 2014 Oct 29. Nucleic Acids Res. 2015. PMID: 25355510 Free PMC article.

4

RiceNet v2: an improved network prioritization server for rice genes.

Lee T, Oh T, Yang S, Shin J, Hwang S, Kim CY, Kim H, Shim H, Shim JE, Ronald PC, Lee I. Lee T, et al. Among authors: shim h, shim je. Nucleic Acids Res. 2015 Jul 1;43(W1):W122-7. doi: 10.1093/nar/gkv253. Epub 2015 Mar 26. Nucleic Acids Res. 2015. PMID: 25813048 Free PMC article.

5

FlyNet: a versatile network prioritization server for the Drosophila community.

Shin J, Yang S, Kim E, Kim CY, Shim H, Cho A, Kim H, Hwang S, Shim JE, Lee I. Shin J, et al. Among authors: shim h, shim je. Nucleic Acids Res. 2015 Jul 1;43(W1):W91-7. doi: 10.1093/nar/gkv453. Epub 2015 May 5. Nucleic Acids Res. 2015. PMID: 25943544 Free PMC article.

6

YeastNet v3: a public database of data-specific and integrated functional gene networks for Saccharomyces cerevisiae.

Kim H, Shin J, Kim E, Kim H, Hwang S, Shim JE, Lee I. Kim H, et al. Among authors: shim je. Nucleic Acids Res. 2014 Jan;42(Database issue):D731-6. doi: 10.1093/nar/gkt981. Epub 2013 Oct 27. Nucleic Acids Res. 2014. PMID: 24165882 Free PMC article.

7

EcoliNet: a database of cofunctional gene network for Escherichia coli.

Kim H, Shim JE, Shin J, Lee I. Kim H, et al. Among authors: shim je. Database (Oxford). 2015 Feb 2;2015:bav001. doi: 10.1093/database/bav001. Print 2015. Database (Oxford). 2015. PMID: 25650278 Free PMC article.

8

Pathway-Dependent Effectiveness of Network Algorithms for Gene Prioritization.

Shim JE, Hwang S, Lee I. Shim JE, et al. PLoS One. 2015 Jun 19;10(6):e0130589. doi: 10.1371/journal.pone.0130589. eCollection 2015. PLoS One. 2015. PMID: 26091506 Free PMC article.

9

Weighted mutual information analysis substantially improves domain-based functional network models.

Shim JE, Lee I. Shim JE, et al. Bioinformatics. 2016 Sep 15;32(18):2824-30. doi: 10.1093/bioinformatics/btw320. Epub 2016 May 20. Bioinformatics. 2016. PMID: 27207946 Free PMC article.

10

TomatoNet: A Genome-wide Co-functional Network for Unveiling Complex Traits of Tomato, a Model Crop for Fleshy Fruits.

Kim H, Kim BS, Shim JE, Hwang S, Yang S, Kim E, Iyer-Pascuzzi AS, Lee I. Kim H, et al. Among authors: shim je. Mol Plant. 2017 Apr 3;10(4):652-655. doi: 10.1016/j.molp.2016.11.010. Epub 2016 Nov 29. Mol Plant. 2017. PMID: 27913317 Free article. No abstract available.

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