Sonnhammer EL - Search Results

1

Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes.

Krogh A, Larsson B, von Heijne G, Sonnhammer EL. Krogh A, et al. Among authors: sonnhammer el. J Mol Biol. 2001 Jan 19;305(3):567-80. doi: 10.1006/jmbi.2000.4315. J Mol Biol. 2001. PMID: 11152613

2

A hidden Markov model for predicting transmembrane helices in protein sequences.

Sonnhammer EL, von Heijne G, Krogh A. Sonnhammer EL, et al. Proc Int Conf Intell Syst Mol Biol. 1998;6:175-82. Proc Int Conf Intell Syst Mol Biol. 1998. PMID: 9783223

3

Volume changes in protein evolution.

Gerstein M, Sonnhammer EL, Chothia C. Gerstein M, et al. Among authors: sonnhammer el. J Mol Biol. 1994 Mar 4;236(4):1067-78. doi: 10.1016/0022-2836(94)90012-4. J Mol Biol. 1994. PMID: 8120887

4

Big data and other challenges in the quest for orthologs.

Sonnhammer EL, Gabaldón T, Sousa da Silva AW, Martin M, Robinson-Rechavi M, Boeckmann B, Thomas PD, Dessimoz C; Quest for Orthologs consortium. Sonnhammer EL, et al. Bioinformatics. 2014 Nov 1;30(21):2993-8. doi: 10.1093/bioinformatics/btu492. Epub 2014 Jul 26. Bioinformatics. 2014. PMID: 25064571 Free PMC article.

5

Integrated graphical analysis of protein sequence features predicted from sequence composition.

Sonnhammer EL, Wootton JC. Sonnhammer EL, et al. Proteins. 2001 Nov 15;45(3):262-73. doi: 10.1002/prot.1146. Proteins. 2001. PMID: 11599029

6

Toward community standards in the quest for orthologs.

Dessimoz C, Gabaldón T, Roos DS, Sonnhammer EL, Herrero J; Quest for Orthologs Consortium. Dessimoz C, et al. Among authors: sonnhammer el. Bioinformatics. 2012 Mar 15;28(6):900-4. doi: 10.1093/bioinformatics/bts050. Epub 2012 Feb 12. Bioinformatics. 2012. PMID: 22332236 Free PMC article.

7

Identification of motifs in protein sequences.

Sonnhammer EL, Wolfsberg TG. Sonnhammer EL, et al. Curr Protoc Cell Biol. 2001 May;Appendix 1:Appendix 1C. doi: 10.1002/0471143030.cba01cs00. Curr Protoc Cell Biol. 2001. PMID: 18228275 Review.

8

The imprint of somatic hypermutation on the repertoire of human germline V genes.

Tomlinson IM, Walter G, Jones PT, Dear PH, Sonnhammer EL, Winter G. Tomlinson IM, et al. Among authors: sonnhammer el. J Mol Biol. 1996 Mar 15;256(5):813-17. doi: 10.1006/jmbi.1996.0127. J Mol Biol. 1996. PMID: 8601832

9

Sequence of the human immunoglobulin diversity (D) segment locus: a systematic analysis provides no evidence for the use of DIR segments, inverted D segments, "minor" D segments or D-D recombination.

Corbett SJ, Tomlinson IM, Sonnhammer EL, Buck D, Winter G. Corbett SJ, et al. Among authors: sonnhammer el. J Mol Biol. 1997 Jul 25;270(4):587-97. doi: 10.1006/jmbi.1997.1141. J Mol Biol. 1997. PMID: 9245589

10

Improved orthology inference with Hieranoid 2.

Kaduk M, Sonnhammer E. Kaduk M, et al. Bioinformatics. 2017 Apr 15;33(8):1154-1159. doi: 10.1093/bioinformatics/btw774. Bioinformatics. 2017. PMID: 28096085

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