Turner DH - Search Results

1

Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure.

Mathews DH, Sabina J, Zuker M, Turner DH. Mathews DH, et al. Among authors: turner dh. J Mol Biol. 1999 May 21;288(5):911-40. doi: 10.1006/jmbi.1999.2700. J Mol Biol. 1999. PMID: 10329189 Free article.

2

Experimentally derived nearest-neighbor parameters for the stability of RNA three- and four-way multibranch loops.

Mathews DH, Turner DH. Mathews DH, et al. Among authors: turner dh. Biochemistry. 2002 Jan 22;41(3):869-80. doi: 10.1021/bi011441d. Biochemistry. 2002. PMID: 11790109

3

Dynalign: an algorithm for finding the secondary structure common to two RNA sequences.

Mathews DH, Turner DH. Mathews DH, et al. Among authors: turner dh. J Mol Biol. 2002 Mar 22;317(2):191-203. doi: 10.1006/jmbi.2001.5351. J Mol Biol. 2002. PMID: 11902836

4

Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure.

Mathews DH, Disney MD, Childs JL, Schroeder SJ, Zuker M, Turner DH. Mathews DH, et al. Among authors: turner dh. Proc Natl Acad Sci U S A. 2004 May 11;101(19):7287-92. doi: 10.1073/pnas.0401799101. Epub 2004 May 3. Proc Natl Acad Sci U S A. 2004. PMID: 15123812 Free PMC article.

5

Prediction of RNA secondary structure by free energy minimization.

Mathews DH, Turner DH. Mathews DH, et al. Among authors: turner dh. Curr Opin Struct Biol. 2006 Jun;16(3):270-8. doi: 10.1016/j.sbi.2006.05.010. Epub 2006 May 19. Curr Opin Struct Biol. 2006. PMID: 16713706 Review.

6

Interpreting oligonucleotide microarray data to determine RNA secondary structure: application to the 3' end of Bombyx mori R2 RNA.

Duan S, Mathews DH, Turner DH. Duan S, et al. Among authors: turner dh. Biochemistry. 2006 Aug 15;45(32):9819-32. doi: 10.1021/bi052618x. Biochemistry. 2006. PMID: 16893182

7

A set of nearest neighbor parameters for predicting the enthalpy change of RNA secondary structure formation.

Lu ZJ, Turner DH, Mathews DH. Lu ZJ, et al. Among authors: turner dh. Nucleic Acids Res. 2006;34(17):4912-24. doi: 10.1093/nar/gkl472. Epub 2006 Sep 18. Nucleic Acids Res. 2006. PMID: 16982646 Free PMC article.

8

RNA secondary structure prediction.

Mathews DH, Turner DH, Zuker M. Mathews DH, et al. Among authors: turner dh. Curr Protoc Nucleic Acid Chem. 2007 Mar;Chapter 11:Unit 11.2. doi: 10.1002/0471142700.nc1102s28. Curr Protoc Nucleic Acid Chem. 2007. PMID: 18428968 Free PMC article.

9

NMR-assisted prediction of RNA secondary structure: identification of a probable pseudoknot in the coding region of an R2 retrotransposon.

Hart JM, Kennedy SD, Mathews DH, Turner DH. Hart JM, et al. Among authors: turner dh. J Am Chem Soc. 2008 Aug 6;130(31):10233-9. doi: 10.1021/ja8026696. Epub 2008 Jul 10. J Am Chem Soc. 2008. PMID: 18613678 Free PMC article.

10

NNDB: the nearest neighbor parameter database for predicting stability of nucleic acid secondary structure.

Turner DH, Mathews DH. Turner DH, et al. Nucleic Acids Res. 2010 Jan;38(Database issue):D280-2. doi: 10.1093/nar/gkp892. Epub 2009 Oct 30. Nucleic Acids Res. 2010. PMID: 19880381 Free PMC article.

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