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Year Number of Results
2021 2
2022 8
2023 3
2024 1

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14 results

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Page 1
Enhanced inhibition of MHC-I expression by SARS-CoV-2 Omicron subvariants.
Moriyama M, Lucas C, Monteiro VS; Yale SARS-CoV-2 Genomic Surveillance Initiative; Iwasaki A. Moriyama M, et al. Proc Natl Acad Sci U S A. 2023 Apr 18;120(16):e2221652120. doi: 10.1073/pnas.2221652120. Epub 2023 Apr 10. Proc Natl Acad Sci U S A. 2023. PMID: 37036977 Free PMC article.
Accelerated SARS-CoV-2 intrahost evolution leading to distinct genotypes during chronic infection.
Chaguza C, Hahn AM, Petrone ME, Zhou S, Ferguson D, Breban MI, Pham K, Peña-Hernández MA, Castaldi C, Hill V; Yale SARS-CoV-2 Genomic Surveillance Initiative; Schulz W, Swanstrom RI, Roberts SC, Grubaugh ND. Chaguza C, et al. Cell Rep Med. 2023 Feb 21;4(2):100943. doi: 10.1016/j.xcrm.2023.100943. Epub 2023 Jan 27. Cell Rep Med. 2023. PMID: 36791724 Free PMC article.
An outbreak of SARS-CoV-2 on a transplant unit in the early vaccination era.
Roberts SC, Foppiano Palacios C, Grubaugh ND, Alpert T, Ott IM, Breban MI; Yale SARS-CoV-2 Genomic Surveillance Initiative; Martinello RA, Smith C, Davis MW, Mcmanus D, Tirmizi S, Topal JE, Azar MM, Malinis M. Roberts SC, et al. Transpl Infect Dis. 2022 Apr;24(2):e13782. doi: 10.1111/tid.13782. Epub 2022 Jan 25. Transpl Infect Dis. 2022. PMID: 34969164
Heterotypic vaccination responses against SARS-CoV-2 Omicron BA.2.
Fang Z, Peng L, Lucas C, Lin Q, Zhou L, Yang L, Feng Y, Ren P, Renauer PA, Monteiro VS, Hahn AM, Park JJ, Zhou X; Yale SARS-CoV-2 Genomic Surveillance Initiative; Grubaugh ND, Wilen CB, Chen S. Fang Z, et al. Cell Discov. 2022 Jul 19;8(1):69. doi: 10.1038/s41421-022-00435-w. Cell Discov. 2022. PMID: 35853867 Free PMC article. No abstract available.
Accelerated SARS-CoV-2 intrahost evolution leading to distinct genotypes during chronic infection.
Chaguza C, Hahn AM, Petrone ME, Zhou S, Ferguson D, Breban MI, Pham K, Peña-Hernández MA, Castaldi C, Hill V; Yale SARS-CoV-2 Genomic Surveillance Initiative; Schulz W, Swanstrom RI, Roberts SC, Grubaugh ND. Chaguza C, et al. medRxiv [Preprint]. 2022 Jul 2:2022.06.29.22276868. doi: 10.1101/2022.06.29.22276868. medRxiv. 2022. PMID: 35794895 Free PMC article. Updated. Preprint.
Impact of circulating SARS-CoV-2 variants on mRNA vaccine-induced immunity.
Lucas C, Vogels CBF, Yildirim I, Rothman JE, Lu P, Monteiro V, Gehlhausen JR, Campbell M, Silva J, Tabachnikova A, Peña-Hernandez MA, Muenker MC, Breban MI, Fauver JR, Mohanty S, Huang J; Yale SARS-CoV-2 Genomic Surveillance Initiative; Shaw AC, Ko AI, Omer SB, Grubaugh ND, Iwasaki A. Lucas C, et al. Nature. 2021 Dec;600(7889):523-529. doi: 10.1038/s41586-021-04085-y. Epub 2021 Oct 11. Nature. 2021. PMID: 34634791 Free PMC article.
Lineage abundance estimation for SARS-CoV-2 in wastewater using transcriptome quantification techniques.
Baaijens JA, Zulli A, Ott IM, Nika I, van der Lugt MJ, Petrone ME, Alpert T, Fauver JR, Kalinich CC, Vogels CBF, Breban MI, Duvallet C, McElroy KA, Ghaeli N, Imakaev M, Mckenzie-Bennett MF, Robison K, Plocik A, Schilling R, Pierson M, Littlefield R, Spencer ML, Simen BB; Yale SARS-CoV-2 Genomic Surveillance Initiative; Hanage WP, Grubaugh ND, Peccia J, Baym M. Baaijens JA, et al. Genome Biol. 2022 Nov 8;23(1):236. doi: 10.1186/s13059-022-02805-9. Genome Biol. 2022. PMID: 36348471 Free PMC article.
Variant abundance estimation for SARS-CoV-2 in wastewater using RNA-Seq quantification.
Baaijens JA, Zulli A, Ott IM, Petrone ME, Alpert T, Fauver JR, Kalinich CC, Vogels CBF, Breban MI, Duvallet C, McElroy K, Ghaeli N, Imakaev M, Mckenzie-Bennett M, Robison K, Plocik A, Schilling R, Pierson M, Littlefield R, Spencer M, Simen BB; Yale SARS-CoV-2 Genomic Surveillance Initiative; Hanage WP, Grubaugh ND, Peccia J, Baym M. Baaijens JA, et al. medRxiv [Preprint]. 2021 Sep 2:2021.08.31.21262938. doi: 10.1101/2021.08.31.21262938. medRxiv. 2021. PMID: 34494031 Free PMC article. Updated. Preprint.
Partial ORF1ab Gene Target Failure with Omicron BA.2.12.1.
Rodino KG, Peaper DR, Kelly BJ, Bushman F, Marques A, Adhikari H, Tu ZJ, Marrero Rolon R, Westblade LF, Green DA, Berry GJ, Wu F, Annavajhala MK, Uhlemann AC, Parikh BA, McMillen T, Jani K, Babady NE, Hahn AM, Koch RT, Grubaugh ND; Yale SARS-CoV-2 Genomic Surveillance Initiative; Rhoads DD. Rodino KG, et al. J Clin Microbiol. 2022 Jun 15;60(6):e0060022. doi: 10.1128/jcm.00600-22. Epub 2022 May 18. J Clin Microbiol. 2022. PMID: 35582905 Free PMC article.
14 results