Zuker M - Search Results

1

Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure.

Mathews DH, Sabina J, Zuker M, Turner DH. Mathews DH, et al. Among authors: zuker m. J Mol Biol. 1999 May 21;288(5):911-40. doi: 10.1006/jmbi.1999.2700. J Mol Biol. 1999. PMID: 10329189 Free article.

2

Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure.

Mathews DH, Disney MD, Childs JL, Schroeder SJ, Zuker M, Turner DH. Mathews DH, et al. Among authors: zuker m. Proc Natl Acad Sci U S A. 2004 May 11;101(19):7287-92. doi: 10.1073/pnas.0401799101. Epub 2004 May 3. Proc Natl Acad Sci U S A. 2004. PMID: 15123812 Free PMC article.

3

RNA secondary structure prediction.

Mathews DH, Turner DH, Zuker M. Mathews DH, et al. Among authors: zuker m. Curr Protoc Nucleic Acid Chem. 2007 Mar;Chapter 11:Unit 11.2. doi: 10.1002/0471142700.nc1102s28. Curr Protoc Nucleic Acid Chem. 2007. PMID: 18428968 Free PMC article.

4

Improved predictions of secondary structures for RNA.

Jaeger JA, Turner DH, Zuker M. Jaeger JA, et al. Among authors: zuker m. Proc Natl Acad Sci U S A. 1989 Oct;86(20):7706-10. doi: 10.1073/pnas.86.20.7706. Proc Natl Acad Sci U S A. 1989. PMID: 2479010 Free PMC article.

5

Coaxial stacking of helixes enhances binding of oligoribonucleotides and improves predictions of RNA folding.

Walter AE, Turner DH, Kim J, Lyttle MH, Müller P, Mathews DH, Zuker M. Walter AE, et al. Among authors: zuker m. Proc Natl Acad Sci U S A. 1994 Sep 27;91(20):9218-22. doi: 10.1073/pnas.91.20.9218. Proc Natl Acad Sci U S A. 1994. PMID: 7524072 Free PMC article.

6

A comparison of optimal and suboptimal RNA secondary structures predicted by free energy minimization with structures determined by phylogenetic comparison.

Zuker M, Jaeger JA, Turner DH. Zuker M, et al. Nucleic Acids Res. 1991 May 25;19(10):2707-14. doi: 10.1093/nar/19.10.2707. Nucleic Acids Res. 1991. PMID: 1710343 Free PMC article.

7

Melting and chemical modification of a cyclized self-splicing group I intron: similarity of structures in 1 M Na+, in 10 mM Mg2+, and in the presence of substrate.

Jaeger JA, Zuker M, Turner DH. Jaeger JA, et al. Among authors: zuker m. Biochemistry. 1990 Nov 6;29(44):10147-58. doi: 10.1021/bi00496a002. Biochemistry. 1990. PMID: 2271644

8

Predicting optimal and suboptimal secondary structure for RNA.

Jaeger JA, Turner DH, Zuker M. Jaeger JA, et al. Among authors: zuker m. Methods Enzymol. 1990;183:281-306. doi: 10.1016/0076-6879(90)83019-6. Methods Enzymol. 1990. PMID: 1690335 No abstract available.

9

UNAFold: software for nucleic acid folding and hybridization.

Markham NR, Zuker M. Markham NR, et al. Among authors: zuker m. Methods Mol Biol. 2008;453:3-31. doi: 10.1007/978-1-60327-429-6_1. Methods Mol Biol. 2008. PMID: 18712296

10

Metrics on RNA secondary structures.

Moulton V, Zuker M, Steel M, Pointon R, Penny D. Moulton V, et al. Among authors: zuker m. J Comput Biol. 2000 Feb-Apr;7(1-2):277-92. doi: 10.1089/10665270050081522. J Comput Biol. 2000. PMID: 10890402

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