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Spark: a navigational paradigm for genomic data exploration.
Nielsen CB, Younesy H, O'Geen H, Xu X, Jackson AR, Milosavljevic A, Wang T, Costello JF, Hirst M, Farnham PJ, Jones SJ. Nielsen CB, et al. Among authors: jones sj. Genome Res. 2012 Nov;22(11):2262-9. doi: 10.1101/gr.140665.112. Epub 2012 Sep 7. Genome Res. 2012. PMID: 22960372 Free PMC article.
Assessment of SAGE in transcript identification.
Pleasance ED, Marra MA, Jones SJ. Pleasance ED, et al. Among authors: jones sj. Genome Res. 2003 Jun;13(6A):1203-15. doi: 10.1101/gr.873003. Epub 2003 May 12. Genome Res. 2003. PMID: 12743019 Free PMC article.
Sockeye: a 3D environment for comparative genomics.
Montgomery SB, Astakhova T, Bilenky M, Birney E, Fu T, Hassel M, Melsopp C, Rak M, Robertson AG, Sleumer M, Siddiqui AS, Jones SJ. Montgomery SB, et al. Among authors: jones sj. Genome Res. 2004 May;14(5):956-62. doi: 10.1101/gr.1890304. Genome Res. 2004. PMID: 15123592 Free PMC article.
A mouse atlas of gene expression: large-scale digital gene-expression profiles from precisely defined developing C57BL/6J mouse tissues and cells.
Siddiqui AS, Khattra J, Delaney AD, Zhao Y, Astell C, Asano J, Babakaiff R, Barber S, Beland J, Bohacec S, Brown-John M, Chand S, Charest D, Charters AM, Cullum R, Dhalla N, Featherstone R, Gerhard DS, Hoffman B, Holt RA, Hou J, Kuo BY, Lee LL, Lee S, Leung D, Ma K, Matsuo C, Mayo M, McDonald H, Prabhu AL, Pandoh P, Riggins GJ, de Algara TR, Rupert JL, Smailus D, Stott J, Tsai M, Varhol R, Vrljicak P, Wong D, Wu MK, Xie YY, Yang G, Zhang I, Hirst M, Jones SJ, Helgason CD, Simpson EM, Hoodless PA, Marra MA. Siddiqui AS, et al. Among authors: jones sj. Proc Natl Acad Sci U S A. 2005 Dec 20;102(51):18485-90. doi: 10.1073/pnas.0509455102. Epub 2005 Dec 13. Proc Natl Acad Sci U S A. 2005. PMID: 16352711 Free PMC article.
Physical map-assisted whole-genome shotgun sequence assemblies.
Warren RL, Varabei D, Platt D, Huang X, Messina D, Yang SP, Kronstad JW, Krzywinski M, Warren WC, Wallis JW, Hillier LW, Chinwalla AT, Schein JE, Siddiqui AS, Marra MA, Wilson RK, Jones SJ. Warren RL, et al. Among authors: jones sj. Genome Res. 2006 Jun;16(6):768-75. doi: 10.1101/gr.5090606. Genome Res. 2006. PMID: 16741162 Free PMC article.
955 results