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RNA sequencing.
Waern K, Nagalakshmi U, Snyder M. Waern K, et al. Among authors: nagalakshmi u. Methods Mol Biol. 2011;759:125-32. doi: 10.1007/978-1-61779-173-4_8. Methods Mol Biol. 2011. PMID: 21863485
Novel transcribed regions in the human genome.
Rozowsky J, Wu J, Lian Z, Nagalakshmi U, Korbel JO, Kapranov P, Zheng D, Dyke S, Newburger P, Miller P, Gingeras TR, Weissman S, Gerstein M, Snyder M. Rozowsky J, et al. Among authors: nagalakshmi u. Cold Spring Harb Symp Quant Biol. 2006;71:111-6. doi: 10.1101/sqb.2006.71.054. Cold Spring Harb Symp Quant Biol. 2006. PMID: 17381286
The DART classification of unannotated transcription within the ENCODE regions: associating transcription with known and novel loci.
Rozowsky JS, Newburger D, Sayward F, Wu J, Jordan G, Korbel JO, Nagalakshmi U, Yang J, Zheng D, Guigó R, Gingeras TR, Weissman S, Miller P, Snyder M, Gerstein MB. Rozowsky JS, et al. Among authors: nagalakshmi u. Genome Res. 2007 Jun;17(6):732-45. doi: 10.1101/gr.5696007. Genome Res. 2007. PMID: 17567993 Free PMC article.
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.
ENCODE Project Consortium; Birney E, Stamatoyannopoulos JA, Dutta A, Guigó R, Gingeras TR, Margulies EH, Weng Z, Snyder M, Dermitzakis ET, Thurman RE, Kuehn MS, Taylor CM, Neph S, Koch CM, Asthana S, Malhotra A, Adzhubei I, Greenbaum JA, Andrews RM, Flicek P, Boyle PJ, Cao H, Carter NP, Clelland GK, Davis S, Day N, Dhami P, Dillon SC, Dorschner MO, Fiegler H, Giresi PG, Goldy J, Hawrylycz M, Haydock A, Humbert R, James KD, Johnson BE, Johnson EM, Frum TT, Rosenzweig ER, Karnani N, Lee K, Lefebvre GC, Navas PA, Neri F, Parker SC, Sabo PJ, Sandstrom R, Shafer A, Vetrie D, Weaver M, Wilcox S, Yu M, Collins FS, Dekker J, Lieb JD, Tullius TD, Crawford GE, Sunyaev S, Noble WS, Dunham I, Denoeud F, Reymond A, Kapranov P, Rozowsky J, Zheng D, Castelo R, Frankish A, Harrow J, Ghosh S, Sandelin A, Hofacker IL, Baertsch R, Keefe D, Dike S, Cheng J, Hirsch HA, Sekinger EA, Lagarde J, Abril JF, Shahab A, Flamm C, Fried C, Hackermüller J, Hertel J, Lindemeyer M, Missal K, Tanzer A, Washietl S, Korbel J, Emanuelsson O, Pedersen JS, Holroyd N, Taylor R, Swarbreck D, Matthews N, Dickson MC, Thomas DJ, Weirauch MT, Gilbert J, Drenkow J, Bell I, Zhao X, Srinivasan KG, Sung WK, Ooi HS, Chiu KP, Foiss… See abstract for full author list ➔ ENCODE Project Consortium, et al. Among authors: nagalakshmi u. Nature. 2007 Jun 14;447(7146):799-816. doi: 10.1038/nature05874. Nature. 2007. PMID: 17571346 Free PMC article.
The Receptor-like Cytoplasmic Kinase BIK1 Localizes to the Nucleus and Regulates Defense Hormone Expression during Plant Innate Immunity.
Lal NK, Nagalakshmi U, Hurlburt NK, Flores R, Bak A, Sone P, Ma X, Song G, Walley J, Shan L, He P, Casteel C, Fisher AJ, Dinesh-Kumar SP. Lal NK, et al. Among authors: nagalakshmi u. Cell Host Microbe. 2018 Apr 11;23(4):485-497.e5. doi: 10.1016/j.chom.2018.03.010. Cell Host Microbe. 2018. PMID: 29649442 Free PMC article.
Perspectives on intracellular perception of plant viruses.
Meier N, Hatch C, Nagalakshmi U, Dinesh-Kumar SP. Meier N, et al. Among authors: nagalakshmi u. Mol Plant Pathol. 2019 Sep;20(9):1185-1190. doi: 10.1111/mpp.12839. Epub 2019 Jul 8. Mol Plant Pathol. 2019. PMID: 31282091 Free PMC article. Review.
26 results