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Orchestrating high-throughput genomic analysis with Bioconductor.
Nat Methods. 2015 Feb;12(2):115-21. doi: 10.1038/nmeth.3252.
Nat Methods. 2015.
PMID: 25633503
Free PMC article.
Review.
VariantAnnotation: a Bioconductor package for exploration and annotation of genetic variants.
Obenchain V, Lawrence M, Carey V, Gogarten S, Shannon P, Morgan M.
Obenchain V, et al.
Bioinformatics. 2014 Jul 15;30(14):2076-8. doi: 10.1093/bioinformatics/btu168. Epub 2014 Mar 28.
Bioinformatics. 2014.
PMID: 24681907
Free PMC article.
Item in Clipboard
Genomic Annotation Resources in R/Bioconductor.
Carlson MR, Pagès H, Arora S, Obenchain V, Morgan M.
Carlson MR, et al. Among authors: obenchain v.
Methods Mol Biol. 2016;1418:67-90. doi: 10.1007/978-1-4939-3578-9_4.
Methods Mol Biol. 2016.
PMID: 27008010
Item in Clipboard
Accessible, curated metagenomic data through ExperimentHub.
Pasolli E, Schiffer L, Manghi P, Renson A, Obenchain V, Truong DT, Beghini F, Malik F, Ramos M, Dowd JB, Huttenhower C, Morgan M, Segata N, Waldron L.
Pasolli E, et al. Among authors: obenchain v.
Nat Methods. 2017 Oct 31;14(11):1023-1024. doi: 10.1038/nmeth.4468.
Nat Methods. 2017.
PMID: 29088129
Free PMC article.
No abstract available.
Item in Clipboard
FluTE, a publicly available stochastic influenza epidemic simulation model.
Chao DL, Halloran ME, Obenchain VJ, Longini IM Jr.
Chao DL, et al. Among authors: obenchain vj.
PLoS Comput Biol. 2010 Jan 29;6(1):e1000656. doi: 10.1371/journal.pcbi.1000656.
PLoS Comput Biol. 2010.
PMID: 20126529
Free PMC article.
Item in Clipboard
Risk prediction using genome-wide association studies.
Kooperberg C, LeBlanc M, Obenchain V.
Kooperberg C, et al. Among authors: obenchain v.
Genet Epidemiol. 2010 Nov;34(7):643-52. doi: 10.1002/gepi.20509.
Genet Epidemiol. 2010.
PMID: 20842684
Free PMC article.
Item in Clipboard
A hybrid EM and Monte Carlo EM algorithm and its application to analysis of transmission of infectious diseases.
Yang Y, Longini IM Jr, Halloran ME, Obenchain V.
Yang Y, et al. Among authors: obenchain v.
Biometrics. 2012 Dec;68(4):1238-49. doi: 10.1111/j.1541-0420.2012.01757.x. Epub 2012 Apr 16.
Biometrics. 2012.
PMID: 22506893
Free PMC article.
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