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Orchestrating high-throughput genomic analysis with Bioconductor.
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M. Huber W, et al. Among authors: obenchain v. Nat Methods. 2015 Feb;12(2):115-21. doi: 10.1038/nmeth.3252. Nat Methods. 2015. PMID: 25633503 Free PMC article. Review.
Genomic Annotation Resources in R/Bioconductor.
Carlson MR, Pagès H, Arora S, Obenchain V, Morgan M. Carlson MR, et al. Among authors: obenchain v. Methods Mol Biol. 2016;1418:67-90. doi: 10.1007/978-1-4939-3578-9_4. Methods Mol Biol. 2016. PMID: 27008010
Accessible, curated metagenomic data through ExperimentHub.
Pasolli E, Schiffer L, Manghi P, Renson A, Obenchain V, Truong DT, Beghini F, Malik F, Ramos M, Dowd JB, Huttenhower C, Morgan M, Segata N, Waldron L. Pasolli E, et al. Among authors: obenchain v. Nat Methods. 2017 Oct 31;14(11):1023-1024. doi: 10.1038/nmeth.4468. Nat Methods. 2017. PMID: 29088129 Free PMC article. No abstract available.
Risk prediction using genome-wide association studies.
Kooperberg C, LeBlanc M, Obenchain V. Kooperberg C, et al. Among authors: obenchain v. Genet Epidemiol. 2010 Nov;34(7):643-52. doi: 10.1002/gepi.20509. Genet Epidemiol. 2010. PMID: 20842684 Free PMC article.