Naegle KM - Search Results

1

New analysis pipeline for high-throughput domain-peptide affinity experiments improves SH2 interaction data.

Ronan T, Garnett R, Naegle KM. Ronan T, et al. Among authors: naegle km. J Biol Chem. 2020 Aug 7;295(32):11346-11363. doi: 10.1074/jbc.RA120.012503. Epub 2020 Jun 15. J Biol Chem. 2020. PMID: 32540967 Free PMC article.

2

Different Epidermal Growth Factor Receptor (EGFR) Agonists Produce Unique Signatures for the Recruitment of Downstream Signaling Proteins.

Ronan T, Macdonald-Obermann JL, Huelsmann L, Bessman NJ, Naegle KM, Pike LJ. Ronan T, et al. Among authors: naegle km. J Biol Chem. 2016 Mar 11;291(11):5528-5540. doi: 10.1074/jbc.M115.710087. Epub 2016 Jan 19. J Biol Chem. 2016. PMID: 26786109 Free PMC article.

3

Avoiding common pitfalls when clustering biological data.

Ronan T, Qi Z, Naegle KM. Ronan T, et al. Among authors: naegle km. Sci Signal. 2016 Jun 14;9(432):re6. doi: 10.1126/scisignal.aad1932. Sci Signal. 2016. PMID: 27303057 Review.

4

PTMScout, a Web resource for analysis of high throughput post-translational proteomics studies.

Naegle KM, Gymrek M, Joughin BA, Wagner JP, Welsch RE, Yaffe MB, Lauffenburger DA, White FM. Naegle KM, et al. Mol Cell Proteomics. 2010 Nov;9(11):2558-70. doi: 10.1074/mcp.M110.001206. Epub 2010 Jul 14. Mol Cell Proteomics. 2010. PMID: 20631208 Free PMC article.

5

Using ProteomeScout: A Resource of Post-Translational Modifications, Their Experiments, and the Proteins That They Annotate.

Mooradian AD, Held JM, Naegle KM. Mooradian AD, et al. Among authors: naegle km. Curr Protoc Bioinformatics. 2017 Sep 13;59:13.32.1-13.32.27. doi: 10.1002/cpbi.31. Curr Protoc Bioinformatics. 2017. PMID: 28902398

6

Proteome-Level Analysis Indicates Global Mechanisms for Post-Translational Regulation of RRM Domains.

Sloutsky R, Naegle KM. Sloutsky R, et al. Among authors: naegle km. J Mol Biol. 2018 Jan 5;430(1):41-44. doi: 10.1016/j.jmb.2017.11.001. Epub 2017 Nov 14. J Mol Biol. 2018. PMID: 29146174

7

Criteria for biological reproducibility: what does "n" mean?

Naegle K, Gough NR, Yaffe MB. Naegle K, et al. Sci Signal. 2015 Apr 7;8(371):fs7. doi: 10.1126/scisignal.aab1125. Sci Signal. 2015. PMID: 25852186 Review.

8

ProteoClade: A taxonomic toolkit for multi-species and metaproteomic analysis.

Mooradian AD, van der Post S, Naegle KM, Held JM. Mooradian AD, et al. Among authors: naegle km. PLoS Comput Biol. 2020 Mar 9;16(3):e1007741. doi: 10.1371/journal.pcbi.1007741. eCollection 2020 Mar. PLoS Comput Biol. 2020. PMID: 32150535 Free PMC article.

9

Reproducible Analysis of Post-Translational Modifications in Proteomes--Application to Human Mutations.

Holehouse AS, Naegle KM. Holehouse AS, et al. Among authors: naegle km. PLoS One. 2015 Dec 14;10(12):e0144692. doi: 10.1371/journal.pone.0144692. eCollection 2015. PLoS One. 2015. PMID: 26659599 Free PMC article.

10

Accounting for noise when clustering biological data.

Sloutsky R, Jimenez N, Swamidass SJ, Naegle KM. Sloutsky R, et al. Among authors: naegle km. Brief Bioinform. 2013 Jul;14(4):423-36. doi: 10.1093/bib/bbs057. Epub 2012 Oct 14. Brief Bioinform. 2013. PMID: 23063929

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